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Sample GSM88168 Query DataSets for GSM88168
Status Public on Aug 22, 2007
Title yeast_nup84 null vs WT_glucose_rep4
Sample type RNA
 
Channel 1
Source name wild type, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics wild type reporter strain (NJS2) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name nup84 null, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics nup84 null reporter strain (NJS10) from S288C background; grown to early-mid log in YEPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy3
 
 
Description labeling done with Agilent's Low RNA Input Linear Amp kit; hybridization and slide processing done according to Agilent instructions
Data processing log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
 
Submission date Dec 16, 2005
Last update date Aug 23, 2006
Contact name Kellie Barbara
E-mail(s) kellie.barbara@gmail.com
Organization name Univ. of Southern MS
Department Biological Sciences
Lab Santangelo Lab
Street address 118 College Dr. #5018
City Hattiesburg
State/province MS
ZIP/Postal code 39406
Country USA
 
Platform ID GPL2883
Series (1)
GSE3853 Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)

Data table header descriptions
ID_REF
VALUE ratio-based and LOWESS normalized log2 ratio
F635 Mean - B635 channel 1 mean minus background
F532 Mean - B532 channel 2 mean minus background

Data table
ID_REF VALUE F635 Mean - B635 F532 Mean - B532
1 -8.302 7 4159
2 -2.124 30 29
3 0.556 79 83
4 0.387 54 63
5 0.312 200 232
6 -0.272 124 68
7 -0.124 28 45
8 -0.407 39 73
9 0.771 203 183
10 0.955 345 273
11 -0.113 104 179
12 0.634 349 341
13 -0.709 14 33
14 -0.499 1554 3475
15 -1.525 7 23
16 -0.041 377 498
17 -0.097 181 117
18 1.495 1286 1384
19 1.661 1016 492
20 -0.846 10 22

Total number of rows: 10807

Table truncated, full table size 193 Kbytes.




Supplementary data files not provided
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