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GEO accession:
Sample GSM88162
Query DataSets for GSM88162
Status
Public on Aug 22, 2007
Title
yeast_gcr1 null vs WT_glucose_rep2
Sample type
RNA
Channel 1
Source name
gcr1 null, 2% glucose
Organism
Saccharomyces cerevisiae
Characteristics
gcr1 null reporter strain (NJS4) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
wild type, 2% glucose
Organism
Saccharomyces cerevisiae
Characteristics
wild type reporter strain (NJS2) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule
total RNA
Label
Cy3
Description
labeling done with Agilent's Low RNA Input Linear Amp kit; hybridization and slide processing done according to Agilent instructions
Data processing
log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
Submission date
Dec 16, 2005
Last update date
Aug 23, 2006
Contact name
Kellie Barbara
E-mail(s)
kellie.barbara@gmail.com
Organization name
Univ. of Southern MS
Department
Biological Sciences
Lab
Santangelo Lab
Street address
118 College Dr. #5018
City
Hattiesburg
State/province
MS
ZIP/Postal code
39406
Country
USA
Platform ID
GPL2883
Series (1)
GSE3853
Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)
Data table header descriptions
ID_REF
VALUE
ratio-based nad LOWESS normalized log2 ratio
F635 Mean - B635
channel 1 mean minus background
F532 Mean - B532
channel 2 mean minus background
Data table
ID_REF
VALUE
F635 Mean - B635
F532 Mean - B532
1
-9.382
8
3809
2
-1.566
6
14
3
0.09
172
122
4
0.074
95
66
5
-0.121
256
210
6
-1.644
8
17
7
0.871
122
49
8
-0.696
29
33
9
-1.549
108
227
10
-0.987
242
358
11
0.22
211
132
12
0.386
611
365
13
-0.521
21
22
14
0.428
2754
1559
15
-1.966
8
19
16
0.136
413
282
17
-0.621
16
18
18
-1.43
691
1411
19
-2.239
274
995
20
-1.805
10
22
Total number of rows:
10807
Table truncated, full table size
195 Kbytes
.
Supplementary data files not provided
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