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Links from GEO DataSets

Items: 20

1.

Whole genome tomato transcriptional response to tomato-adapted and non-adapted Tetranychus urticae herbivory

(Submitter supplied) Generalist arthropod herbivores rapidly adapt to a broad range of host plants. However, the extent of transcriptional reprogramming in the herbivore and its hosts associated with adaptation remains poorly understood. Using the spider mite Tetranychus urticae and tomato as models with available genomic resources, we investigated the reciprocal genome-wide transcriptional changes in both spider mite and tomato as a consequence of mite’s adaptation to tomato We used microarray to assess global gene expression in Solanum lycopersicum cv. more...
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL16358
20 Samples
Download data: CEL
Series
Accession:
GSE70375
ID:
200070375
2.

Whole genome tomato transcriptional response to Tetranychus evansi herbivory.

(Submitter supplied) The red spider mite, Tetranychus evansi, is a oligophagous specialist mite pest of Solanaceae plants. Here, we described tomato transcriptional responses to T. evansi feeding and compared them to responses to tomato-adapted and -non-adapted strains of generalist herbivorous spider mite Tetranychus urticae. We used microarray to assess global gene expression in Solanum lycopersicum cv. Heinz 1706 upon T. more...
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL16358
6 Samples
Download data: CEL
Series
Accession:
GSE227740
ID:
200227740
3.

Host plant adaptation of a polyphagous herbivore shapes transcriptome of both herbivore and host

(Submitter supplied) In an experimental evolutionary set-up, we transferred a genetically diverse strain of the spider mite Tetranychus urticae from its common host bean to tomato where replicated populations were allowed to adapt. By sampling the transcriptomes of non-adapted and adaptes mites feeding on bean and tomato, we identified gene-expression changes in the spider mite affiliated with tomato adaptation. Transcriptional analysis revealed that both constitutive gene-expression levels as well as the transcriptional plasticity of genes were affected. more...
Organism:
Tetranychus urticae
Type:
Expression profiling by array
Platform:
GPL16890
12 Samples
Download data: TXT
Series
Accession:
GSE68708
ID:
200068708
4.

Whole genome tomato transcriptional response to Tetranychus urticae herbivory [Heinz1706]

(Submitter supplied) The two-spotted spider mite, Tetranychus urticae, is one of the most significant mite pests in agriculture that can feed on more than 1,100 plant hosts, including model plants Arabidopsis thaliana and tomato, Solanum lycopersicum. Here, we described tomato transcriptional responses to spider mite feeding and compared them to Arabidopsis in order to determine conserved and divergent responses to this pest. more...
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL16358
21 Samples
Download data: CEL, TXT
Series
Accession:
GSE61074
ID:
200061074
5.

A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae

(Submitter supplied) The goal of our microarray experiments was twofold: 1) Compare the gene expression profile of acaricide resistant spider mite strains (MAR-AB and MR-VP) with that of a susceptible spider mite strain (London); 2) Study gene expression changes in spider mites from the London strain upon transfer from bean, a suitable host, to tomato, a less favorable host. These gene expression changes upon host change were measured for three timepoints (2 hour on tomato (Tomato-2h), 12 hour on tomato (Tomato-12h) and 5 generations on tomato (Tomato-5G)).
Organism:
Tetranychus urticae
Type:
Expression profiling by array
Platform:
GPL15756
23 Samples
Download data: TXT
Series
Accession:
GSE39869
ID:
200039869
6.

Comparative transcriptomics of tomato plants simultaneously infested with different species of herbivorous mites reveals distinct signatures of host defense suppression

(Submitter supplied) Tomato plants are commonly attacked by herbivorous mites, including by generalist Tetranychus urticae and specialists Tetranychus evansi and Aculops lycopersici. Mite feeding induces plant defense responses that reduce mite performance. However, via poorly understood mechanisms, T. evansi and A. lycopersici suppress plant defenses and, consequently, maintain a high performance on tomato. Accordingly, on a shared host, non-adapted T. more...
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL25309
24 Samples
Download data: FTR
Series
Accession:
GSE116827
ID:
200116827
7.

Whole genome tomato transcriptional response to Tetranychus urticae herbivory

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL16358
33 Samples
Download data: CEL
Series
Accession:
GSE61076
ID:
200061076
8.

Whole genome tomato transcriptional response to jasmonic acid treatment and Tetranychus urticae herbivory [def-1]

(Submitter supplied) The two-spotted spider mite, Tetranychus urticae, is one of the most significant mite pests in agriculture that can feed on more than 1,100 plant hosts, including model plants Arabidopsis thaliana and tomato, Solanum lycopersicum. In order to refine the involvement of jasmonic acid (JA) in mite-induced responses, we analyzed transcriptional changes in tomato JA signaling mutant defenseless1 (def-1) upon JA treatment and spider mite herbivory. more...
Organism:
Solanum lycopersicum
Type:
Expression profiling by array
Platform:
GPL16358
12 Samples
Download data: CEL, TXT
Series
Accession:
GSE61075
ID:
200061075
9.

Reciprocal transcriptional responses in the interaction between Arabidopsis thaliana and Tetranychus urticae.

(Submitter supplied) While pathogen-induced immunity is comparatively well characterized, far less is known about plant defense responses to arthropod herbivores. To date, most molecular-genetic studies of plant-arthropod interactions have focused on insects. However, plant-feeding (phytophagous) mites are also pests of diverse plants, and mites induce different patterns of damage to plant tissues than do well-studied insects (e.g., Lepidopteran larvae or aphids). more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by array
Platform:
GPL16112
28 Samples
Download data: CEL
Series
Accession:
GSE49981
ID:
200049981
10.

Spider mite responses to feeding on Col-0, myb28 myb29 cyp79b2 cyp79b3, and atr1D Arabidopsis plants

(Submitter supplied) Our goal was to investigate the transcriptional response of T. urticae to different Arabidopsis plants with varying levels of indole glucosinolates.
Organism:
Tetranychus urticae
Type:
Expression profiling by array
Platform:
GPL16890
12 Samples
Download data: TXT
Series
Accession:
GSE48771
ID:
200048771
11.

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Tetranychus urticae
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform:
GPL14176
26 Samples
Download data: TXT
Series
Accession:
GSE32342
ID:
200032342
12.

Transcriptional responses of the two-spotted spider mite (Tetranychus urticae) after transfer to different plant hosts

(Submitter supplied) We generated 38-bp Illumina reads from messenger RNA libraries from mites transferred from their preferred laboratory host, bean (Phaseolus vulgaris cv. California Red Kidney), to one of three hosts: bean, Arabidopsis thaliana (Bla-2 accession) and the tomato (Solanum lycopersicum; genotype Heinz 1706). Larvae were carefully collected from bean plants and transferred to the treatment plant. Mites were reared on these plants for ~24 hours, after which mites were collected for mRNA library preparation. more...
Organism:
Tetranychus urticae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14176
9 Samples
Download data: TXT
Series
Accession:
GSE32009
ID:
200032009
13.

Developmental stage-specific small RNA composition in the two-spotted spider mite (Tetranychus urticae)

(Submitter supplied) We generated 38-bp Illumina reads from single messenger RNA libraries from three diverse developmental stages of the two-spotted spider mite to capture small RNA diversity across development. Adult, nymphal+larvae and embryonic stages were separated using sieves of various pore sizes, and mites of various developmental stages were carefully selected for small RNA library preparation. Samples were a mix of males and females to capture male and female patterns of small RNA composition and were reared on beans (Phaseolus vulgaris cv California Red Kidney). more...
Organism:
Tetranychus urticae
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL14176
3 Samples
Download data: TXT
Series
Accession:
GSE32005
ID:
200032005
14.

Developmental stage-specific gene expression in the two-spotted spider mite (Tetranychus urticae)

(Submitter supplied) We generated 77-bp Illumina reads from single messenger RNA libraries from four diverse developmental stages of the two-spotted spider mite to maximally capture the complement of transcribed sequences across development. Adult, nymphal, larvae and embryonic stages were separated using sieves of various pore sizes, and mites of various developmental stages were carefully selected for transcriptome library preparation. more...
Organism:
Tetranychus urticae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14176
8 Samples
Download data: TXT
Series
Accession:
GSE31527
ID:
200031527
15.

Spider mite preliminary feeding experiment with mites reared on bean and two Arabidopsis thaliana accessions

(Submitter supplied) We sequenced messenger RNA from mixed stages of the two-spotted spider mite (Tetranychus urticae) reared on bean (Phaseolus vulgaris cv California Red Kidney; the laboratory host plant for mites) and two Arabidopsis thaliana accessions which were considered to either be susceptible (Kondara) or resistant (Bla-2) to mite feeding. This pilot experiment was conducted to assess gene expression differences of mites grown on sensitive versus resistant Arabidopsis accessions, as well as differences in mites feeding on different host species. more...
Organism:
Tetranychus urticae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14176
6 Samples
Download data: TXT
Series
Accession:
GSE31525
ID:
200031525
16.

Genome wide gene-expression analysis of the spider mite Tetranychus urticae after transfer from their common host (bean) to either cotton, maize or soy

(Submitter supplied) A genetically diverse strain (labelled as London) of the phytophagous mite Tetranychus urticae was transferred from its common host (bean) to other host plants (cotton, maize or soy). Three different host plant species were included in the experimental set-up: cotton (Gossypium spp.), maize (Zea mays cv. Ronaldinio) and soy (Glycine max cv. Merlin). Five generations after host-transfer, total RNA of all mite populations (London, London-SOY, London-MAIZE and London-COTTON) was collected and used in a genome-wide gene expression microarray (Sureprint G3 microarray, Agilent) Microarray analysis revealed large-scale differential expression of genes coding for enzymes of detoxification families, secreted proteins with unknown functions and regulatory enzymes.
Organism:
Tetranychus urticae
Type:
Expression profiling by array
Platform:
GPL16890
11 Samples
Download data: TXT
Series
Accession:
GSE80337
ID:
200080337
17.

Genome wide gene-expression analysis of the spider mite Tetranychus urticae after long term host transfer from acyanogenic Phaseolus vulgaris cv. 'Prelude' bean plants to cyanogenic Phaseolus lunatus cv. '8078' bean plants

(Submitter supplied) 250 adult T. urticae females from the London strain (grown on acyanogenic P. vulgaris cv. Prelude bean plants) were transferred to cyanogenic P. lunatus cv. 8078 bean plants. Thirty-five generations after the host transfer, total RNA was extracted from mites growing on both bean species (London and London-CYANO strain) and used in in a genome-wide gene expression microarray (Sureprint G3 microarray, Agilent) experiment to assess significantly differentially expressed genes (FC ≥ 2 and FDR-corrected p-value < 0.05) between mites grown on P. more...
Organism:
Tetranychus urticae
Type:
Expression profiling by array
Platform:
GPL16890
4 Samples
Download data: TXT
Series
Accession:
GSE50162
ID:
200050162
18.

Maize transcriptional responses to specialist and generalist spider mite herbivores

(Submitter supplied) Spider mites, including the two-spotted spider mite (Tetranychus urticae, TSSM) and the Banks grass mite (Oligonychus pratensis, BGM), are becoming increasingly important agricultural pests. The TSSM is an extreme generalist documented to feed on more than 1100 plant hosts. In contrast, the BGM is a grass specialist, with hosts including important cereal crops like maize, wheat, and sorghum. Historically, studies of plant-herbivore interactions have focused largely on insects. more...
Organism:
Zea mays
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17628
28 Samples
Download data: TXT
Series
Accession:
GSE100121
ID:
200100121
19.

Barley transcriptional responses to specialist and generalist spider mite herbivores

(Submitter supplied) Spider mites, including the two-spotted spider mite (Tetranychus urticae, TSSM) and the Banks grass mite (Oligonychus pratensis, BGM), are becoming increasingly important agricultural pests. The TSSM is an extreme generalist documented to feed on more than 1100 plant hosts. In contrast, the BGM is a grass specialist, with hosts including important cereal crops like maize, wheat, sorghum and barley. Historically, studies of plant-herbivore interactions have focused largely on insects. However, far less is known about plant responses to spider mite herbivores, especially in grasses, and whether responses differ between generalists and specialists. To identify plant defense pathways responding to spider mites, we collected time course RNA-seq data from barley (Hordeum vulgare L.) infested with TSSMs and BGMs. Additionally, and as a comparison to the physical damage caused by spider mite feeding, a wounding treatment was also included.
Organism:
Hordeum vulgare
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22077
28 Samples
Download data: TXT
Series
Accession:
GSE83676
ID:
200083676
20.

Gene expression data for body versus head samples for detection of genes with enriched expression in salivary glands of the spider mite Tetranychus urticae

(Submitter supplied) Proteins produced in the salivary glands of arthropod herbivores can function as effectors to modify plant defense responses. To obtain a set of candidate, salivary gland specific genes for the mite herbivore Tetranychus urticae, mites were dissected and the head region was recovered. Specifically, the proterosoma was dissected from 250 mites. This includes the salivary glands, and other nearby tissue (given their small size, exact micro-dissection of salivary glands was not possible). more...
Organism:
Tetranychus urticae
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21813
4 Samples
Download data: TXT
Series
Accession:
GSE81128
ID:
200081128
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