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Platform GPL15756 Query DataSets for GPL15756
Status Public on Jul 06, 2012
Title Agilent-028213 Tetranychus urticae Expression Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Tetranychus urticae
Manufacturer Agilent Technologies
Manufacture protocol See the manufacturer's web site at http://www.agilent.com/.
 
Description Tetur Expression Array

Design Format: 8 x 60 K

Arrays of this design have barcodes that begin with 16028213 or 2528213.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jun 28, 2012
Last update date Jul 06, 2012
Contact name Wannes Dermauw
E-mail(s) wannes.dermauw@ugent.be
Phone 003292646192
Organization name University Ghent
Department Crop Protection
Lab Agrozoology
Street address Coupure Links 653
City Ghent
ZIP/Postal code 9000
Country Belgium
 
Samples (28) GSM980545, GSM980546, GSM980547, GSM980548, GSM980549, GSM980550 
Series (2)
GSE39869 A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae
GSE43538 Spirodiclofen resistance in the spider mite Tetranychus urticae

Data table header descriptions
ID Agilent Feature Number
COL Column
ROW Row
NAME NAME
Tetur_ID Gene identifier in BOGAS (http://bioinformatics.psb.ugent.be/webtools/bogas/overview/Tetur)
CONTROL_TYPE Control type
SPOT_ID Spot identifier
SEQUENCE Sequence of oligonucleotide

Data table
ID COL ROW NAME Tetur_ID CONTROL_TYPE SPOT_ID SEQUENCE
1 192 328 GE_BrightCorner pos --GE_BrightCorner
2 192 326 DarkCorner pos --DarkCorner
3 192 324 DarkCorner pos --DarkCorner
4 192 322 CUST_37547_PI425186676 tetur36g00900 FALSE CUST_37547_PI425186676 TAATTTTAGTAACAATAATTCACTAGCCACTACACCTTCATCCACACCGCCGCCAACCG
5 192 320 CUST_46031_PI425186676 tetur02g14891 FALSE CUST_46031_PI425186676 ACGACTCAAGCAAACAACGCATCGTCATTTTACACATATGAAAGTTCACTTCTCGAAGCT
6 192 318 CUST_4154_PI425186676 tetur11g03260 FALSE CUST_4154_PI425186676 ACCCGTGATCTCCATTTGGATGAAGATGTACCATTAATTTTTTTCACTCACCGAGATGCT
7 192 316 Rep18g01850 tetur18g02120 FALSE Rep18g01850 TGAATCTCTATACCAGACCATCAGCTATCGGTGAGTCTTGTATGCCTCCATCTAGTACCT
8 192 314 CUST_50139_PI425186676 tetur06g02540 FALSE CUST_50139_PI425186676 GGCCATGGATCTGTTAATACAGCGGCTGGACCATTATCTCAAATAGGAAAGTTGTTCAA
9 192 312 CUST_58394_PI425186676 FALSE CUST_58394_PI425186676 TGGTTTTGTTCATGTGTTGGTTATGAACATGATGCTGTTGATCATGCTGGTGATGGTGAA
10 192 310 CUST_10030_PI425186676 FALSE CUST_10030_PI425186676 TCAACAAATATGAGAACTACTGCATGTACCGTTCGGCCGTTACCTCGAAAAAAGTCTCTC
11 192 308 Rep01g12450 tetur01g15440 FALSE Rep01g12450 AAACAATATGGCTAGATCATCTCGTGTCGAACCAGACTCTAACAACGCACCGACAAAT
12 192 306 Rep08g06930 tetur08g07590 FALSE Rep08g06930 CGTGGTCCATCAAAATTTCAAGGAAATCGAGTGACAATTGATGGTCTTGGAGATGCTTCA
13 192 304 CUST_31669_PI425186676 tetur02g08200, tetur02g12670 FALSE CUST_31669_PI425186676 ACCTCAAATTACGTTGGACCGGCATAACGGATCAGCTACAAACATATACAACGAAGATAA
14 192 302 CUST_4773_PI425186676 tetur11g05210, tetur11g05230 FALSE CUST_4773_PI425186676 GGTTAATAAAATTGGCGTTTCTAGCGATTCCGTTGGCCCAATAGTTCAAAGAGGCTGTAA
15 192 300 CUST_35110_PI425186676 tetur31g01910 FALSE CUST_35110_PI425186676 GAATCCACATCGAGCTCTTCTTGGCCTTGGCAATTATGACGTTAATGTTATCATGTCAGC
16 192 298 CUST_4172_PI425186676 tetur11g03320 FALSE CUST_4172_PI425186676 GGGTGCCATAGACGTTTTGCCAATCTCTGTATGGTTTTGTCGATGCTTTTCTGGAATAAT
17 192 296 CUST_49566_PI425186676 tetur06g00700 FALSE CUST_49566_PI425186676 TTAAGCTGCTGTCAACTATCTCGTAATGGGAAAAGTGTTGTAGCTTGCCTCACTGATTCA
18 192 294 CUST_47664_PI425186676 tetur05g04830 FALSE CUST_47664_PI425186676 CACCCACATTGCCTTTTGGTCAATTAAGTGTGCTAGTTTCTGGTATGAATTAGGCCATGA
19 192 292 CUST_32169_PI425186676 FALSE CUST_32169_PI425186676 TCGCTGGTTACGGATTTGCAGACATGAAAGGAAGAATGTTGTCAAACGCAAAAAGTTTTG
20 192 290 CUST_18378_PI425186676 tetur01g08880 FALSE CUST_18378_PI425186676 AAACAAGCCTTAGGACGCAAGAAAGATTACCTTAGGTTACGAGATGAAGGCAAAGCTGAA

Total number of rows: 62976

Table truncated, full table size 8372 Kbytes.




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