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Series GSE39869 Query DataSets for GSE39869
Status Public on Dec 04, 2012
Title A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae
Organism Tetranychus urticae
Experiment type Expression profiling by array
Summary The goal of our microarray experiments was twofold: 1) Compare the gene expression profile of acaricide resistant spider mite strains (MAR-AB and MR-VP) with that of a susceptible spider mite strain (London); 2) Study gene expression changes in spider mites from the London strain upon transfer from bean, a suitable host, to tomato, a less favorable host. These gene expression changes upon host change were measured for three timepoints (2 hour on tomato (Tomato-2h), 12 hour on tomato (Tomato-12h) and 5 generations on tomato (Tomato-5G)).
 
Overall design 23 samples were analyzed: 6 biological replicates for MR-VP, 5 biological replicates for MAR-AB and four biological replicates each for Tomato-2h, Tomato-12h and Tomato-5G
 
Contributor(s) Dermauw W, Wybouw N, Rombauts S, Van Leeuwen T
Citation(s) 23248300
Submission date Aug 03, 2012
Last update date Jan 22, 2013
Contact name Wannes Dermauw
E-mail(s) wannes.dermauw@ugent.be
Phone 003292646192
Organization name University Ghent
Department Crop Protection
Lab Agrozoology
Street address Coupure Links 653
City Ghent
ZIP/Postal code 9000
Country Belgium
 
Platforms (1)
GPL15756 Agilent-028213 Tetranychus urticae Expression Array
Samples (23)
GSM980545 MR-VP_rep1
GSM980546 MR-VP_rep2
GSM980547 MR-VP_rep3
Relations
BioProject PRJNA171920

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39869_MAR-AB_processed_data.txt.gz 8.1 Kb (ftp)(http) TXT
GSE39869_MR-VP_processed_data.txt.gz 7.4 Kb (ftp)(http) TXT
GSE39869_RAW.tar 137.6 Mb (http)(custom) TAR (of TXT)
GSE39869_Tomato-12h_processed_data.txt.gz 3.5 Kb (ftp)(http) TXT
GSE39869_Tomato-2h_processed_data.txt.gz 226 b (ftp)(http) TXT
GSE39869_Tomato-5G_processed_data.txt.gz 10.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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