NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE31525 Query DataSets for GSE31525
Status Public on Nov 23, 2011
Title Spider mite preliminary feeding experiment with mites reared on bean and two Arabidopsis thaliana accessions
Organism Tetranychus urticae
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced messenger RNA from mixed stages of the two-spotted spider mite (Tetranychus urticae) reared on bean (Phaseolus vulgaris cv California Red Kidney; the laboratory host plant for mites) and two Arabidopsis thaliana accessions which were considered to either be susceptible (Kondara) or resistant (Bla-2) to mite feeding. This pilot experiment was conducted to assess gene expression differences of mites grown on sensitive versus resistant Arabidopsis accessions, as well as differences in mites feeding on different host species. The expression data was used for gene model validation of genes predicted by EuGene in the spider mite genome and to assess gene expression levels.
 
Overall design Examination of gene expression of spider mites reared on beans and two Arabidopsis accessions (Kondara and Bla-2).
 
Contributor(s) Clark RM, Osborne EJ
Citation(s) 22113690, 23663308
Submission date Aug 18, 2011
Last update date Sep 16, 2019
Contact name Richard M Clark
Organization name University of Utah
Department Department of Biology
Lab Clark Laboratory
Street address 257 So. 1400 East, RM 204 SB
City Salt Lake City
State/province Utah
ZIP/Postal code 84112
Country USA
 
Platforms (1)
GPL14176 Illumina Genome Analyzer II (Tetranychus urticae)
Samples (6)
GSM782625 turt_bean_feeding_rep_1
GSM782626 turt_bean_feeding_rep_2
GSM782627 turt_bla2_feeding_rep_1
This SubSeries is part of SuperSeries:
GSE32342 The genome of Tetranychus urticae reveals herbivorous pest adaptations
Relations
SRA SRP007884
BioProject PRJNA154987

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31525_RAW.tar 970.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap