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Series GSE80337 Query DataSets for GSE80337
Status Public on Oct 10, 2016
Title Genome wide gene-expression analysis of the spider mite Tetranychus urticae after transfer from their common host (bean) to either cotton, maize or soy
Organism Tetranychus urticae
Experiment type Expression profiling by array
Summary A genetically diverse strain (labelled as London) of the phytophagous mite Tetranychus urticae was transferred from its common host (bean) to other host plants (cotton, maize or soy).
Three different host plant species were included in the experimental set-up: cotton (Gossypium spp.), maize (Zea mays cv. Ronaldinio) and soy (Glycine max cv. Merlin). Five generations after host-transfer, total RNA of all mite populations (London, London-SOY, London-MAIZE and London-COTTON) was collected and used in a genome-wide gene expression microarray (Sureprint G3 microarray, Agilent)
Microarray analysis revealed large-scale differential expression of genes coding for enzymes of detoxification families, secreted proteins with unknown functions and regulatory enzymes.
 
Overall design Three major comparisons were investigated: 4 biological replicates of soy adaptation (London-SOY vs London), 4 biological replicates of maize adaptation (London-MAIZE vs London) and 3 biological replicates of cotton adaptation (London-COTTON vs London).
 
Contributor(s) Jonckheere W, Dermauw W, Wybouw N, Van Leeuwen T
Citation(s) 27703040, 30333191
Submission date Apr 15, 2016
Last update date Dec 26, 2018
Contact name Nicky Wybouw
Organization name University of Ghent
Department Department of Crop Protection
Street address Coupure Links 653
City Gent
ZIP/Postal code 9000
Country Belgium
 
Platforms (1)
GPL16890 Agilent-033850 Tetranychus urticae 63K array
Samples (11)
GSM2124774 soy adaptation1
GSM2124775 soy adaptation2
GSM2124776 soy adaptation3
Relations
BioProject PRJNA318632

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80337_RAW.tar 66.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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