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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 07, 2017 |
| Title |
HiSeq X Ten (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| |
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| Submission date |
Mar 07, 2017 |
| Last update date |
Jan 02, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (3320)
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GSM2525600, GSM2525601, GSM2525602, GSM2525603, GSM2637965, GSM2637966
GSM2637967, GSM2637968, GSM2637969, GSM2637970, GSM2637971, GSM2637972, GSM2637973, GSM2637974, GSM2637975, GSM2637976, GSM2637977, GSM2643434, GSM2890267, GSM2890268, GSM2904733, GSM2904734, GSM2904735, GSM2904736, GSM2904737, GSM2904738, GSM2904739, GSM2904740, GSM2904741, GSM2904742, GSM2904743, GSM2904744, GSM3026964, GSM3026965, GSM3026966, GSM3026967, GSM3026968, GSM3026969, GSM3026970, GSM3026971, GSM3026972, GSM3026973, GSM3026974, GSM3026975, GSM3138079, GSM3138080, GSM3138081, GSM3138082, GSM3138083, GSM3138084, GSM3138085, GSM3138086, GSM3138087, GSM3138088, GSM3146634, GSM3146635, GSM3146636, GSM3146637, GSM3146638, GSM3146639, GSM3146640, GSM3146641, GSM3146642, GSM3146643, GSM3146644, GSM3146645, GSM3146646, GSM3146647, GSM3146648, GSM3146649, GSM3146650, GSM3146651, GSM3146652, GSM3154215, GSM3154216, GSM3154217, GSM3154218, GSM3154219, GSM3154220, GSM3208238, GSM3208239, GSM3208240, GSM3208241, GSM3208242, GSM3208243, GSM3214328, GSM3214329, GSM3214330, GSM3214331, GSM3214332, GSM3214333, GSM3214334, GSM3214335, GSM3214336, GSM3214337, GSM3214338, GSM3214339, GSM3214340, GSM3214341, GSM3214342, GSM3214343, GSM3214344, GSM3214345, GSM3214346, GSM3214347, GSM3214348, GSM3214349, GSM3214350, GSM3214351, GSM3214352, GSM3214353, GSM3214354, GSM3214355, GSM3214356, GSM3214357, GSM3214358, GSM3214359, GSM3214360, GSM3214361, GSM3214364, GSM3214365, GSM3214366, GSM3214367, GSM3214368, GSM3214369, GSM3214370, GSM3214371, GSM3214372, GSM3214373, GSM3214374, GSM3214376, GSM3214377, GSM3214378, GSM3214379, GSM3214380, GSM3214381, GSM3214382, GSM3214383, GSM3230364, GSM3230365, GSM3230366, GSM3230367, GSM3230368, GSM3230369, GSM3243169, GSM3243170, GSM3243171, GSM3243441, GSM3243442, GSM3243443, GSM3317914, GSM3317915, GSM3317916, GSM3317917, GSM3317918, GSM3317919, GSM3317920, GSM3317921, GSM3317922, GSM3317923, GSM3317924, GSM3317925, GSM3317926, GSM3317927, GSM3317928, GSM3317929, GSM3317930, GSM3317931, GSM3317932, GSM3317933, GSM3317934, GSM3317935, GSM3319350, GSM3319351, GSM3319352, GSM3319353, GSM3319354, GSM3319355, GSM3319356, GSM3319357, GSM3319358, GSM3325566, GSM3325567, GSM3325568, GSM3325569, GSM3325570, GSM3325571, GSM3325572, GSM3325573, GSM3349579, GSM3349580, GSM3349581, GSM3349582, GSM3349583, GSM3349584, GSM3349585, GSM3349586, GSM3349587, GSM3349588, GSM3349589, GSM3349590, GSM3349591, GSM3408800, GSM3408801, GSM3408802, GSM3408803, GSM3408804, GSM3408805, GSM3408808, GSM3408809, GSM3408810, GSM3408813, GSM3408814, GSM3408815, GSM3408818, GSM3408819, GSM3408820, GSM3408823, GSM3408824, GSM3408825, GSM3408828, GSM3408829, GSM3408830, GSM3408831, GSM3408832, GSM3408833, GSM3408834, GSM3408835, GSM3408836, GSM3408837, GSM3408838, GSM3408839, GSM3408840, GSM3408841, GSM3408842, GSM3408843, GSM3408844, GSM3408845, GSM3408856, GSM3408857, GSM3408858, GSM3408859, GSM3408860, GSM3408861, GSM3408862, GSM3408863, GSM3408864, GSM3423801, GSM3423802, GSM3423803, GSM3423804, GSM3423805, GSM3423806, GSM3423807, GSM3423808, GSM3423809, GSM3423810, GSM3423811, GSM3423812, GSM3423813, GSM3423814, GSM3423815, GSM3423816, GSM3423817, GSM3423818, GSM3423819, GSM3423820, GSM3423821, GSM3423822, GSM3423823, GSM3423824, GSM3423825, GSM3423826, GSM3423827, GSM3443311, GSM3443312, GSM3532783, GSM3532784, GSM3532785, GSM3532786, GSM3535305, GSM3535306, GSM3535307, GSM3535308, GSM3535309, GSM3535310, GSM3535311, GSM3535312, GSM3559379, GSM3559380, GSM3559381, GSM3559382, GSM3559383, GSM3559384, GSM3559812, GSM3559813, GSM3559814, GSM3559815, GSM3559816, GSM3559817, GSM3559818, GSM3559819, GSM3562680, GSM3562681, GSM3562682, GSM3562683, GSM3574724, GSM3574725, GSM3574726, GSM3574727, GSM3590024, GSM3590025, GSM3590026, GSM3590027, GSM3590028, GSM3590029, GSM3590030, GSM3590031, GSM3590032, GSM3590033, GSM3590034, GSM3590035, GSM3590036, GSM3590037, GSM3590038, GSM3590039, GSM3590040, GSM3590041, GSM3620606, GSM3620607, GSM3620608, GSM3620610, GSM3620611, GSM3620613, GSM3620614, GSM3620615, GSM3620616, GSM3620618, GSM3620619, GSM3620620, GSM3620622, GSM3620623, GSM3620625, GSM3620626, GSM3620627, GSM3620628, GSM3620630, GSM3620631, GSM3620632, GSM3620633, GSM3620635, GSM3620637, GSM3620638, GSM3620639, GSM3620641, GSM3620642, GSM3703540, GSM3703541, GSM3703542, GSM3703543, GSM3704253, GSM3704254, GSM3704255, GSM3704256, GSM3704257, GSM3704258, GSM3704259, GSM3704260, GSM3704261, GSM3704262, GSM3704263, GSM3704264, GSM3704265, GSM3704266, GSM3704267, GSM3704268, GSM3704269, GSM3704270, GSM3704271, GSM3704272, GSM3704273, GSM3704274, GSM3704275, GSM3704276, GSM3704277, GSM3704278, GSM3704279, GSM3704280, GSM3704281, GSM3704282, GSM3704283, GSM3704284, GSM3704285, GSM3704286, GSM3704287, GSM3704288, GSM3704289, GSM3704290, GSM3704291, GSM3704292, GSM3704293, GSM3704294, GSM3704295, GSM3704296, GSM3704297, GSM3704298, GSM3704299, GSM3704300, GSM3743498, GSM3743499, GSM3743500, GSM3815221, GSM3815222, GSM3815223, GSM3815224, GSM3815225, GSM3815226, GSM3815227, GSM3815228, GSM3834690, GSM3834691, GSM3834692, GSM3928334, GSM3928335, GSM3928336, GSM3928337, GSM3928338, GSM3928339, GSM3928340, GSM3928341, GSM3928342, GSM3928343, GSM3928344, GSM3928345, GSM4029329, GSM4029330, GSM4029331, GSM4029332, GSM4029333, GSM4029334, GSM4029335, GSM4029336, GSM4029337, GSM4029338, GSM4029339, GSM4029340, GSM4029341, GSM4029342, GSM4029343, GSM4029344, GSM4029345, GSM4029346, GSM4029347, GSM4038494, GSM4038495, GSM4038496, GSM4038497, GSM4038498, GSM4038499, GSM4038500, GSM4038501, GSM4038502, GSM4038503, GSM4038504, GSM4038505, GSM4038506, GSM4038507, GSM4038508, GSM4038509, GSM4038510, GSM4038511, GSM4038512, GSM4038513, GSM4038514, GSM4038515, GSM4038516, GSM4038517, GSM4038518, GSM4038519, GSM4038520, GSM4038521, GSM4038522, GSM4038523, GSM4038524, GSM4038525, GSM4038526, GSM4073057, GSM4073058, GSM4073059, GSM4073060, GSM4073061, GSM4073062, GSM4073063, GSM4073064, GSM4073065, GSM4073066, GSM4073067, GSM4073068, GSM4073069, GSM4073070...
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| Series (221)
|
| GSE77672 |
Genome-wide identification of circular RNAs in Arabidopsis thaliana |
| GSE95765 |
Genome-wide maps of R-loops in Arabidopsis |
| GSE103924 |
Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS) |
| GSE108117 |
Formaldehyde-crosslinking and immunoprecipitation (FA-CLIP) sequencing to identify ECT2 targets in Arabidopsis |
| GSE108119 |
RNA-seq and FA-CLIP studying ECT2 function in Arabidopsis |
| GSE108544 |
Transcriptomic analysis of regulatory gene expression profiles by DELLA and LEC1 during embryo development in Arabidopsis thaliana. |
| GSE110342 |
Impact of G-content on Arabidopsis AtPAB binding and their role in enhancing translational efficiency |
| GSE111238 |
The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs [mRNA] |
| GSE111240 |
The disease resistance protein SNC1 represses the biogenesis of microRNAs and phased siRNAs in Arabidopsis |
| GSE114221 |
Heat-induced transgenerational memory of upregulated gene expression |
| GSE114664 |
Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) sequencing of msh1 memory line |
| GSE114665 |
Bisulfite (methylome) sequencing of msh1 memory line treated with 5-azacytidine in Arabidopsis |
| GSE114666 |
FAIRE-seq and Bisulfite-seq of Arabidopsis wild type and msh1 memory line |
| GSE114898 |
Arabidopsis TRM5 encodes a nuclear-localised tRNA guanine-N1-methyltransferase and is important for plant growth |
| GSE116066 |
The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing [RNA-Seq] |
| GSE116068 |
The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing |
| GSE116232 |
R-loop landscapes in Arabidopsis |
| GSE116381 |
The circadian PRRs quintet orchestrates photoperiodic responsive hypocotyl growth by transcriptionally repressing PIF4/PIF5 in Arabidopsis |
| GSE116581 |
fruitENCODE: An encyclopedia of DNA elements for fruit ripening |
| GSE117318 |
Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation |
| GSE118063 |
Multivalent H3K9me2 Reader ADCP1 Functions as a plant HP1 to Maintain Epigenetic Silencing |
| GSE118143 |
Transcriptome sequencing of A.thaliana leaves after exposure to silver nanoparticles. |
| GSE118338 |
Long heat stress induced RNA dynamics in Arabidopsis |
| GSE118874 |
Bisulfite (methylome) sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis |
| GSE120709 |
Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA |
| GSE121003 |
Maternal to zygotic transition：A two-step process with two phases of ZGA occurs in zygote right after fertilization in Arabidopsis |
| GSE121683 |
ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis |
| GSE124416 |
Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in long day conditions [RNA-seq] |
| GSE124498 |
Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in short day conditions [RNA-seq] |
| GSE124499 |
Genome-wide analysis of wild type, hda6, hdc1, and hda19 in short and long day conditions |
| GSE124918 |
Gene expression analysis of flower buds from BnA9::BnMAGL8.1 and WT |
| GSE124943 |
Genome-wide profiling of γH2AX in Arabidopsis |
| GSE125096 |
pNET-seq (Pol II Ser5) in Arabidopsis |
| GSE125468 |
Transcriptome analysis of differentially expressed genes in the feronia (fer-4) mutant |
| GSE126064 |
Global co-transcriptional splicing in Arabidopsis and the correlation with splicing regulation in mature RNAs |
| GSE127002 |
The RNA NAD+ cap is widespread in the Arabidopsis transcriptome and probably promotes translation |
| GSE129249 |
Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands |
| GSE129303 |
Bisulfite (methylome) sequencing of msh1 memory line and non-memory (normal looking) sibling plants with isogenic Col-0 wild-type control in Arabidopsis [generation 2 to 6] |
| GSE130559 |
The Catalytic Core of DEMETER Guides Active DNA Demethylation in Arabidopsis |
| GSE131756 |
Removal of H2Aub1 by ubiquitin-specific proteases 12 and 13 is required for stable Polycomb-mediated gene repression in Arabidopsis |
| GSE135422 |
Cell lineage-specific transcriptome analysis for interpreting cell fate specification of proembryos |
| GSE135961 |
Plant 22-nt siRNAs mediate translational repression and stress adaptation |
| GSE136164 |
Plant 22-nt siRNAs mediate translational repression and stress adaptation |
| GSE137212 |
Salicylic Acid Suppresses Apical Hook Formation via NPR1-Mediated Repression of EIN3/EIL1 in Arabidopsis |
| GSE137750 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation [Bisulfite-seq 1] |
| GSE137751 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation [ChIP-seq] |
| GSE137753 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation [RNA-seq 1] |
| GSE137754 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation |
| GSE139458 |
Comprehensive analysis of the SWR1 complex reveals the coupling of H2A.Z deposition with nucleosome sliding in Arabidopsis [RNA-Seq] |
| GSE139459 |
Comprehensive analysis of the SWR1 complex reveals the coupling of H2A.Z deposition with nucleosome sliding in Arabidopsis [ChIP-Seq] |
| GSE139460 |
Comprehensive analysis of the SWR1 complex reveals the coupling of H2A.Z deposition with nucleosome sliding in Arabidopsis [MNase-Seq] |
| GSE139465 |
Comprehensive analysis of the SWR1 complex reveals the coupling of H2A.Z deposition with nucleosome sliding in Arabidopsis |
| GSE139636 |
Dual recognition of H3K4me3 and DNA by the ISWI component ARID5 regulates floral phase transition in Arabidopsis [ChIP-Seq] |
| GSE139637 |
Dual recognition of H3K4me3 and DNA by the ISWI component ARID5 regulates floral phase transition in Arabidopsis [RNA-Seq] |
| GSE139638 |
Dual recognition of H3K4me3 and DNA by the ISWI component ARID5 regulates floral phase transition in Arabidopsis |
| GSE140136 |
Intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis (ChIP-seq) |
| GSE140140 |
Intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis |
| GSE140977 |
Cellular trajectory analysis links tissue maturation to cellular specialization in the plant meristem II |
| GSE141145 |
Next Generation Sequencing Facilitates Quantitative Analysis of Col, myb30 and MYB30-OE Transcriptomes |
| GSE142369 |
BRIP1/2 are core members of SWI/SNF complex |
| GSE142613 |
Photoperiod-mediated Chromatin Accessibility in the Single Cell Types of Leaf Phloem and Epidermis in Arabidopsis |
| GSE142622 |
Next Generation Sequencing Facilitates Quantitative Analysis of in 14-day-old wt, brm-1, brm-3, brip1, brip2, brip1 brip2, brip1 brip2 brm-3 and brip1 brip2 brm-1 seedlings. |
| GSE142747 |
Genome-wide expression analysis of PTI and ETI responses in wild type and PRR-deficient Arabidopsis plants |
| GSE143720 |
m6A reader CPSF70 controls polyadenylation site choice through m6A-dependent recognition of FUE polyadenylation signal |
| GSE144536 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation [Bisulfite-seq 2] |
| GSE144537 |
The DREAM complexes prevent genomic hypermethylation by repressing the expression of genes required for maintenance of DNA methylation [RNA-seq 2] |
| GSE146089 |
Organ specific analysis of PIFq in Arabidopsis |
| GSE146914 |
XPO4 negatively regulates immune activation in the cpr5 mutant |
| GSE146948 |
The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation |
| GSE147212 |
Transcriptome analysis of pFD::amiR-PECT1 under non-inductive light conditions |
| GSE147682 |
KA120 negatively regulates effector-triggered immunity [RNA-seq] |
| GSE147968 |
Transcriptome analysis of mutations in plant nuclear membrane proteins PNET2A/B/C |
| GSE148428 |
The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production [Bisulfite-seq] |
| GSE148430 |
The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production |
| GSE148753 |
RNA interference-independent reprogramming of DNA methylation in Arabidopsis |
| GSE150114 |
RNAseq for atino80 mutant at dark condition |
| GSE150116 |
AtINO80 represses photomorphogenesis by modulating nucleosome density and H2A.Z incorporation in light-related genes (RNA-seq) |
| GSE152564 |
Bisulfite (methylome) sequencing of progenies of Col-0 grafted on msh1; Col-0 grafted on dcl2,3,4,msh1; Col-0 grafted on Col-0; msh1 mutant; dcl2,3,4,msh1 quadruple mutant in Arabidopsis [msh1_graft_BS-seq] |
| GSE152570 |
Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants |
| GSE152776 |
The function of intragenic tRNA R-loop |
| GSE152910 |
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading[RNA-seq] |
| GSE152911 |
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading |
| GSE154409 |
Next Generation Sequencing Facilitates Quantitative Analysis of WT,cop1 and cor27cor28 mutant Transcriptomes |
| GSE154416 |
Next Generation Sequencing Facilitates Quantitative Analysis of WT and HY5 mutant Transcriptomes |
| GSE154695 |
H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [ATAC-seq] |
| GSE154696 |
H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [ChIP-seq] |
| GSE154697 |
H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [RNA-seq] |
| GSE155317 |
DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs [DAP-seq] |
| GSE155321 |
DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs |
| GSE155378 |
H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots |
| GSE155710 |
PIF4 / 5 is required for heat stress-induced leaf senescence |
| GSE155853 |
Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 3 days post infection |
| GSE156016 |
TIC regulates hypocotyl growth in Arabidopsis by inhibiting PHYA signal |
| GSE156025 |
Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 14 days post infection |
| GSE156093 |
AGO4 participates in germination during salinity |
| GSE156597 |
Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block |
| GSE156608 |
Active DNA demethylation regulates MAMP-triggered immunity in Arabidopsis |
| GSE157030 |
Genome-wide enhancer identification by massively parallel reporter assay in Arabidopsis |
| GSE157670 |
Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation |
| GSE157957 |
Complementary capability of cell division and photosynthesis triggers growth vigor in Arabidopsis hybrids |
| GSE161366 |
Histone H2B.8 compacts flowering plant sperm through chromatin phase separation |
| GSE161546 |
Conserved and unique features of the SAGA complex in plants [ChIP-seq] |
| GSE161547 |
Conserved and unique features of the SAGA complex in plants |
| GSE161940 |
Sequencing analysis of six eukaryotic transcriptome in Arabidopsis thaliana |
| GSE162374 |
The SNF2 ATPase-independent function of the INO80 chromatin remodeler [ChIP-seq] |
| GSE162375 |
The SNF2 ATPase-independent function of the INO80 chromatin remodeler |
| GSE162458 |
Coordination of Mediator Complex and Histone Acetyltransferase CBP/p300 in Transcriptional Regulation [ChIP-seq] |
| GSE162459 |
Coordination of Mediator Complex and Histone Acetyltransferase CBP/p300 in Transcriptional Regulation |
| GSE163262 |
Whole genome bisulfite sequencing of five-week-old Arabidopsis thaliana (ecotype Col-0) plants from water and jasmonic acid treated seedlings. |
| GSE163271 |
Long-lasting memory of jasmonic acid-dependent immunity requires DNA demethylation and ARGONAUTE1 |
| GSE163845 |
Genome-wide identification of RNA-chromatin interactions in Arabidopsis |
| GSE163911 |
mRNA-seq of Arabidopsis bz1728, nobiro6, nbr-t1 and taf12-t1 mutants |
| GSE164325 |
RNA-seq analysis of WT and bdt1 in Arabidopsis. |
| GSE165432 |
Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription [ChIP-seq] |
| GSE165434 |
Involvement of UBA2C in ambient temperature-dependent flowering by promoting FLM transcription |
| GSE165574 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (smallRNA-seq dataset) |
| GSE165575 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation |
| GSE165877 |
Pathway conversion enables a double-lock mechanism to maintain DNA methylation and genome stability |
| GSE166088 |
Arabidopsis RPD3-type histone deacetylases form multiple plant-specific complexes that are required for preventing overexpression of stress-induced genes (ChIP-Seq) |
| GSE166090 |
Arabidopsis RPD3-type histone deacetylases form multiple plant-specific complexes that are required for preventing overexpression of stress-induced genes |
| GSE168119 |
The INO80 chromatin remodeling complex promotes thermomorphogenesis by connecting H2A.Z eviction and active transcription in Arabidopsis[ChIP-seq] |
| GSE168120 |
The INO80 chromatin remodeling complex promotes thermomorphogenesis by connecting H2A.Z eviction and active transcription in Arabidopsis |
| GSE169179 |
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [ChIP-seq] |
| GSE169180 |
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin |
| GSE169473 |
Sugar activates defense signaling in Arabidopsis |
| GSE169497 |
DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and plant development |
| GSE171414 |
WGBS of 169 ddm1-derived epiRILs |
| GSE173630 |
FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin [H3K27me3 ChIP-Seq]. |
| GSE174656 |
AG- and AP3- domain specific FANS RNA-seq |
| GSE176432 |
Genome-wide occupancy of SWO1 in Arabidopsis [ChIP-seq] |
| GSE176434 |
Target sites of SWO1 and their expression under salt stress |
| GSE176526 |
Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis |
| GSE179700 |
Master transcription factors of plant immunity are targeted by a Ralstonia solanacearum effector |
| GSE181486 |
The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [ChIP-seq] |
| GSE181488 |
The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis [GRO-seq] |
| GSE181489 |
The DREAM complex antagonizes WDR5a and represses the productive elongation of transcription in Arabidopsis |
| GSE181598 |
Genome-wide identification of RNA-chromatin interactions in Arabidopsis [GRO-seq] |
| GSE181721 |
Genome-wide identification of transcribed enhancer candidates during pattern triggered immunity in Arabidopsis |
| GSE181896 |
Local and global crosstalk among heterochromatin marks drives epigenome patterning in Arabidopsis |
| GSE182672 |
An Arabidopsis root phloem pole cell atlas reveals PINEAPPLE genes as transitioners to autotrophy [bulk RNA-seq] |
| GSE182673 |
An Arabidopsis root phloem pole cell atlas reveals PINEAPPLE genes as transitioners to autotrophy |
| GSE182724 |
Submergence-responsive genes in Col-0 |
| GSE183560 |
A 5’ tRNA-Ala derived small RNA regulates anti-fungal defense in plants |
| GSE183957 |
DNA Methylation shapes histone modification landscape for transcription regulation in Arabidopsis [ChIP-Seq] |
| GSE183985 |
DNA Methylation shapes histone modification landscape for transcription regulation in Arabidopsis [RNA-Seq] |
| GSE183986 |
DNA Methylation shapes histone modification landscape for transcription regulation in Arabidopsis [WGBS] |
| GSE183987 |
DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis |
| GSE184730 |
Subtype-selective agonists of COI1-JAZ co-receptors screened from the stereochemical-isomers of jasmonate mimic |
| GSE185120 |
Genome-wide H3K27me3 analysis in Arabidopsis |
| GSE185121 |
Genome-wide H3K4me3 analysis in Arabidopsis |
| GSE185123 |
Genome-wide H3K27me3 and H3K4me3 analyses in Arabidopsis |
| GSE188606 |
RNA seq of Wild Type, PSR1-expressing plants and PINP1-silenced plants |
| GSE188968 |
Geminiviruses employ host DNA glycosylases to subvert DNA methylation-mediated defense |
| GSE189222 |
Boric acidon intercepts 80S ribosome migration from AUG-stop by stable eRF1 immobilization |
| GSE192428 |
MSH1 disruption in plants triggers RdDM-mediated reprogramming of phenotypic plasticity (Bisulfite-Seq I) |
| GSE193804 |
Polysome profiling of Arabidopsis translatome upon hypertonic stress |
| GSE197614 |
RTEL1 is involved in transcriptional gene silencing and inhibition of heterochromatic DNA methylation |
| GSE199625 |
Whole genome bisulfite sequencing of two/three-week-old Arabidopsis thaliana plants of the genotypes Col-0, nrpe1-11 and ros1-4. |
| GSE199667 |
Transcriptome analysis of mutations in plant novel nuclear basket protein GBPL3 pnet2_abc mutants |
| GSE201379 |
Determination of transcriptomic changes associated with progressive drought stress in ethanol treated vs non-treated control Arabidopsis plants |
| GSE201380 |
Transcriptomic analysis of ethanol-pretreated Arabidopsis WT shoots under drought conditions |
| GSE206683 |
COMPASS complexes redundantly regulate gene expression and DNA methylation in Arabidopsis [Bisulfite-seq] |
| GSE206685 |
COMPASS complexes redundantly regulate gene expression and DNA methylation in Arabidopsis [ChIP-seq] |
| GSE206687 |
COMPASS complexes redundantly regulate gene expression and DNA methylation in Arabidopsis [RNA-seq] |
| GSE206688 |
COMPASS complexes redundantly regulate gene expression and DNA methylation in Arabidopsis |
| GSE207010 |
3D Landscape of Regulatory Elements and Transcription Factors for Transcription in Arabidopsis |
| GSE207396 |
Peptidyl-prolyl isomerase Cyclophilin 71 promotes SERRATE phase separation and miRNA processing in Arabidopsis [miRNA-Seq] |
| GSE210413 |
Effects of ein2-1 mutation on the miRNA expression during callus formation after submergence |
| GSE211715 |
Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [WGBS_epiHybrids] |
| GSE211716 |
Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [WGBS_epiRILs] |
| GSE211717 |
Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids [WGS] |
| GSE211719 |
Parental pericentromeric methylation status drives methylome remodeling and heterosis in Arabidopsis hybrids |
| GSE212364 |
The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities [ncRNA_seq] |
| GSE212365 |
The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities |
| GSE212855 |
HOT3/eIF5B1 confers Kozak motif-dependent translational control of photosynthesis-associated nuclear genes for chloroplast biogenesis |
| GSE212856 |
HOT3/eIF5B1 confers Kozak motif-dependent translational control of photosynthesis-associated nuclear genes for chloroplast biogenesis |
| GSE212857 |
HOT3/eIF5B1 confers Kozak motif-dependent translational control of photosynthesis-associated nuclear genes for chloroplast biogenesis |
| GSE214366 |
Transcriptome profiling of Arabidopsis seedlings upon hyperosmotic stress |
| GSE216361 |
MicroRNA156 conditions auxin sensitivity to enable growth plasticity in response to environmental changes in Arabidopsis (miRNA-Seq) |
| GSE216362 |
MicroRNA156 conditions auxin sensitivity to enable growth plasticity in response to environmental changes in Arabidopsis |
| GSE216786 |
Epigenetic-driven Synergistic and Antagonistic regulation on Transposable Elements Carried Out by HDA6 and LDL1/2 [ATAC-Seq] |
| GSE216787 |
Epigenetic-driven Synergistic and Antagonistic regulation on Transposable Elements Carried Out by HDA6 and LDL1/2 [WGBS] |
| GSE216789 |
Epigenetic-driven Synergistic and Antagonistic regulation on Transposable Elements Carried Out by HDA6 and LDL1/2 |
| GSE217277 |
Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape (Bisulfite-Seq) |
| GSE217278 |
Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape (RNA-Seq) |
| GSE217279 |
Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape |
| GSE218066 |
DDM1-facilitated R-loop resolution and H2A.Z exclusion primes heterochromatin formation in Arabidopsis [ssDRIP-seq, ChIP-seq, pNET-seq, ATAC-seq] |
| GSE218148 |
DDM1-facilitated R-loop resolution and H2A.Z exclusion primes heterochromatin formation in Arabidopsis |
| GSE220115 |
GLK ChIP-seq and ATAC-seq data in Arabidopsis, Tobacco, Tomato, Rice and Maize. |
| GSE223168 |
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (Ribo-Seq) |
| GSE223172 |
Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation |
| GSE223861 |
An evolutionary epigenetic clock in plants [Biostress] |
| GSE223862 |
An evolutionary epigenetic clock in plants |
| GSE224480 |
The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities [sRNA-seq] |
| GSE224481 |
The N-terminal extension of Arabidopsis ARGONAUTE 1 is essential for microRNA activities II |
| GSE224520 |
mRNA profiles of 7-day-old seedlings of wild type (Col-0) and MAC3BQ77A/D81A-GFP mutant |
| GSE228425 |
Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants [AGeRdDM BSseq] |
| GSE228429 |
Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants [AGeRdDM ssRNAseq] |
| GSE228431 |
Promiscuous CRE-CRE interaction that acts as a causative force driving de novel methylation in cis-regulatory elements in plants |
| GSE228513 |
A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants [ARE BSseq] |
| GSE228515 |
A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants [ARE ssRNAseq] |
| GSE228518 |
A novel anti-RdDM element that defends cis-regulatory element against ncRNA-dependent, siRNA-driven, and methylation-imposed transcriptional silencing in plants |
| GSE228589 |
SMXL4/5-HsfA2 regulatory loop orchestrates plant growth-thermotolerance trade-off |
| GSE229873 |
BS-seq and H3K9me2 ChIP-seq in Arabidopsis after flavopiridol (FLA) treatment |
| GSE233525 |
3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [ATAC-seq] |
| GSE233526 |
3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [ChIP-seq] |
| GSE233527 |
3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis [ChIA-PET] |
| GSE233528 |
3D Landscape of Regulatory Elements and Transcription Factors for Transcriptional Regulation in Arabidopsis |
| GSE235657 |
Peptidyl-prolyl isomerase Cyclophilin 71 promotes SERRATE phase separation and miRNA processing in Arabidopsis |
| GSE246527 |
H3K9 methylation regulates heterochromatin silencing through incoherent feedforward loops |
| GSE255066 |
GLABRA2 Transcription Factor integrates Arsenic tolerance with cell differentiation in Epidermal Cells [Exp2] |
| GSE255067 |
GLABRA2 Transcription Factor integrates Arsenic tolerance with cell differentiation in Epidermal Cells |
| GSE255444 |
Cold stress induces rapid gene-specific changes in the levels of H3K4me3 and H3K27me3 in Arabidopsis thaliana [ChIP-Seq] |
| GSE255445 |
Cold stress induces rapid gene-specific changes in the levels of H3K4me3 and H3K27me3 in Arabidopsis thaliana |
| GSE262780 |
Determination of transcriptomic changes induced by the DPAM-1 treatment under normal and salinity stress conditions |
| GSE263224 |
Centrophilic retrotransposon integration via targeting CENH3 chromatin in Arabidopsis [TED-seq] |
| GSE263225 |
Centrophilic retrotransposon integration via targeting CENH3 chromatin in Arabidopsis [ChIP-Seq] |
| GSE266624 |
miRNA-seq analysis using Arabidopsis Col-0 WT and hasty KO mutant |
| GSE273725 |
Transcriptome analysis of callus tissues generated from pnet1 mutant, PNET1 overexpression line, and wild-type Arabidopsis |
| GSE276894 |
Simultaneous Profiling of Chromatin-Associated RNA at Targeted DNA Loci and RNA-RNA Interactions through TaDRIM-Seq II |
| GSE277439 |
Comparative characterization of the seven H3K4 methyltransferases in Arabidopsis thaliana |
|
| Supplementary data files not provided |
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