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| Status |
Public on Dec 31, 2018 |
| Title |
Genome-wide expression analysis of wild type, hda6, hdc1, and hda19 in short day conditions [RNA-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate how HDC1, HDA6, and HDA19 regulate gene transcription and flowering time in short day conditions, we performed RNA deep sequencing (RNA-seq) to compare the transcriptomes of wild type, hdc1, hda6, and hda19 mutants grown in short day conditions with two biological repeats.
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| Overall design |
Transcriptomes of wild type, hda6, hdc1, and hda19 grown in short day conditions for 18 days were generated by deep sequencing, using Illumina HiSeqXTen.
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| Contributor(s) |
Ning Y, Lin R, He X |
| Citation(s) |
30828924 |
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| Submission date |
Dec 30, 2018 |
| Last update date |
Apr 01, 2019 |
| Contact name |
xinjian He |
| E-mail(s) |
hexinjian@nibs.ac.cn
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| Organization name |
National Institute of Biological Sciences
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| Lab |
hexinjian
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| Street address |
No. 7, zhongguancun life science park road, changping district
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| City |
Beijing |
| ZIP/Postal code |
102206 |
| Country |
China |
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| Platforms (1) |
| GPL23157 |
HiSeq X Ten (Arabidopsis thaliana) |
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| Samples (8)
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| This SubSeries is part of SuperSeries: |
| GSE124499 |
Genome-wide analysis of wild type, hda6, hdc1, and hda19 in short and long day conditions |
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| Relations |
| BioProject |
PRJNA512228 |
| SRA |
SRP174898 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE124498_RAW.tar |
157.6 Mb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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