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GEO accession:
Series GSE136164
Query DataSets for GSE136164
Status
Public on Feb 14, 2020
Title
Plant 22-nt siRNAs mediate translational repression and stress adaptation
Organism
Arabidopsis thaliana
Experiment type
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32376953
,
38637717
Submission date
Aug 21, 2019
Last update date
May 01, 2024
Contact name
Bosheng Li
E-mail(s)
libs@sustc.edu.cn
Organization name
SUSTC (current, may different with previous institution )
Department
MCDB
Street address
SUStech Huiyuan #1 406
City
Shenzhen
State/province
Guangdong
ZIP/Postal code
581055
Country
China
Platforms (3)
GPL21785
Illumina HiSeq 4000 (Arabidopsis thaliana)
GPL23157
HiSeq X Ten (Arabidopsis thaliana)
GPL26208
Illumina NovaSeq 6000 (Arabidopsis thaliana)
Samples (136)
Less...
More...
GSM4038408
Col-0 aerial part_rep1 (smRNA)
GSM4038409
Col-0 aerial part_rep2 (smRNA)
GSM4038410
Col-0 aerial part_rep3 (smRNA)
GSM4038411
Col-0 aerial part_rep4 (smRNA)
GSM4038412
dcl2-1 aerial part_rep1 (smRNA)
GSM4038413
dcl2-1 aerial part_rep2 (smRNA)
GSM4038414
dcl2-1 aerial part_rep3 (smRNA)
GSM4038415
dcl2-1 aerial part_rep4 (smRNA)
GSM4038416
dcl4-2 aerial part_rep1 (smRNA)
GSM4038417
dcl4-2 aerial part_rep2 (smRNA)
GSM4038418
dcl4-2 aerial part_rep3 (smRNA)
GSM4038419
dcl4-2 aerial part_rep4 (smRNA)
GSM4038420
ein5-1 aerial part_rep1 (smRNA)
GSM4038421
ein5-1 aerial part_rep2 (smRNA)
GSM4038422
ein5-1 aerial part_rep3 (smRNA)
GSM4038423
ein5-1 aerial part_rep4 (smRNA)
GSM4038424
ski2-2 aerial part_rep1 (smRNA)
GSM4038425
ski2-2 aerial part_rep2 (smRNA)
GSM4038426
ski2-2 aerial part_rep3 (smRNA)
GSM4038427
ski2-2 aerial part_rep4 (smRNA)
GSM4038428
ein5-1 dcl4-2 aerial part_rep1 (smRNA)
GSM4038429
ein5-1 dcl4-2 aerial part_rep2 (smRNA)
GSM4038430
ein5-1 dcl4-2 aerial part_rep3 (smRNA)
GSM4038431
ein5-1 dcl4-2 aerial part_rep4 (smRNA)
GSM4038432
ein5-1 dcl2-1 aerial part_rep1 (smRNA)
GSM4038433
ein5-1 dcl2-1 aerial part_rep2 (smRNA)
GSM4038434
ein5-1 dcl2-1 aerial part_rep3 (smRNA)
GSM4038435
ein5-1 dcl2-1 aerial part_rep4 (smRNA)
GSM4038436
ein5-1 dcl4-2 dcl2-1 aerial part_rep1 (smRNA)
GSM4038437
ein5-1 dcl4-2 dcl2-1 aerial part_rep2 (smRNA)
GSM4038438
ein5-1 dcl4-2 dcl2-1 aerial part_rep3 (smRNA)
GSM4038439
ein5-1 dcl4-2 dcl2-1 aerial part_rep4 (smRNA)
GSM4038440
ski2-2 dcl4-2 aerial part_rep1 (smRNA)
GSM4038441
ski2-2 dcl4-2 aerial part_rep2 (smRNA)
GSM4038442
ski2-2 dcl4-2 aerial part_rep3 (smRNA)
GSM4038443
ski2-2 dcl4-2 aerial part_rep4 (smRNA)
GSM4038444
ski2-2 dcl2-1 aerial part_rep1 (smRNA)
GSM4038445
ski2-2 dcl2-1 aerial part_rep2 (smRNA)
GSM4038446
ski2-2 dcl2-1 aerial part_rep3 (smRNA)
GSM4038447
ski2-2 dcl2-1 aerial part_rep4 (smRNA)
GSM4038448
ski2-2 dcl4-2 dcl2-1 aerial part_rep1 (smRNA)
GSM4038449
ski2-2 dcl4-2 dcl2-1 aerial part_rep2 (smRNA)
GSM4038450
ski2-2 dcl4-2 dcl2-1 aerial part_rep3 (smRNA)
GSM4038451
ski2-2 dcl4-2 dcl2-1 aerial part_rep4 (smRNA)
GSM4038452
ein5-1 dcl4-2 ago1-45 aerial part_rep1 (smRNA)
GSM4038453
ein5-1 dcl4-2 ago1-45 aerial part_rep2 (smRNA)
GSM4038454
ein5-1 dcl4-2 ago1-45 aerial part_rep3 (smRNA)
GSM4038455
ein5-1 dcl4-2 ago1-45 aerial part_rep4 (smRNA)
GSM4038456
ein5-1 dcl4-2 ago1-27 aerial part_rep1 (smRNA)
GSM4038457
ein5-1 dcl4-2 ago1-27 aerial part_rep2 (smRNA)
GSM4038458
ein5-1 dcl4-2 ago1-27 aerial part_rep3 (smRNA)
GSM4038459
ein5-1 dcl4-2 ago1-27 aerial part_rep4 (smRNA)
GSM4038460
ski2-2 dcl4-2 ago1-45 aerial part_rep1 (smRNA)
GSM4038461
ski2-2 dcl4-2 ago1-45 aerial part_rep2 (smRNA)
GSM4038462
ski2-2 dcl4-2 ago1-45 aerial part_rep3 (smRNA)
GSM4038463
ski2-2 dcl4-2 ago1-45 aerial part_rep4 (smRNA)
GSM4038464
ski2-2 dcl4-2 ago1-27 aerial part_rep1 (smRNA)
GSM4038465
ski2-2 dcl4-2 ago1-27 aerial part_rep2 (smRNA)
GSM4038466
ski2-2 dcl4-2 ago1-27 aerial part_rep3 (smRNA)
GSM4038473
Col-0 MS whole seedling_rep1 (smRNA)
GSM4038474
Col-0 MS whole seedling_rep2 (smRNA)
GSM4038475
Col-0 MS whole seedling_rep3 (smRNA)
GSM4038476
Col-0 MS-N whole seedling_rep1 (smRNA)
GSM4038477
Col-0 MS-N whole seedling_rep2 (smRNA)
GSM4038478
Col-0 MS-N whole seedling_rep3 (smRNA)
GSM4038479
dcl4-2 MS whole seedling_rep1 (smRNA)
GSM4038480
dcl4-2 MS whole seedling_rep2 (smRNA)
GSM4038481
dcl4-2 MS whole seedling_rep3 (smRNA)
GSM4038482
dcl4-2 MS-N whole seedling_rep1 (smRNA)
GSM4038483
dcl4-2 MS-N whole seedling_rep2 (smRNA)
GSM4038484
dcl4-2 MS-N whole seedling_rep3 (smRNA)
GSM4038494
Col-0 aerial part _rep1 (mRNA)
GSM4038495
Col-0 aerial part_rep2 (mRNA)
GSM4038496
Col-0 aerial part_rep3 (mRNA)
GSM4038497
dcl4-2 aerial part_rep1 (mRNA)
GSM4038498
dcl4-2 aerial part_rep2 (mRNA)
GSM4038499
dcl4-2 aerial part_rep3 (mRNA)
GSM4038500
dcl2-1 aerial part_rep1 (mRNA)
GSM4038501
dcl2-1 aerial part_rep2 (mRNA)
GSM4038502
dcl2-1 aerial part_rep3 (mRNA)
GSM4038503
ein5-1 aerial part_rep1 (mRNA)
GSM4038504
ein5-1 aerial part_rep2 (mRNA)
GSM4038505
ein5-1 aerial part_rep3 (mRNA)
GSM4038506
ein5-1 dcl4-2 aerial part_rep1 (mRNA)
GSM4038507
ein5-1 dcl4-2 aerial part_rep2 (mRNA)
GSM4038508
ein5-1 dcl4-2 aerial part_rep3 (mRNA)
GSM4038509
ein5-1 dcl2-1 aerial part_rep1 (mRNA)
GSM4038510
ein5-1 dcl2-1 aerial part_rep2 (mRNA)
GSM4038511
ein5-1 dcl2-1 aerial part_rep3 (mRNA)
GSM4038512
ein5-1 dcl4-2 dcl2-1 aerial part_rep1 (mRNA)
GSM4038513
ein5-1 dcl4-2 dcl2-1 aerial part_rep2 (mRNA)
GSM4038514
ein5-1 dcl4-2 dcl2-1 aerial part_rep3 (mRNA)
GSM4038515
ski2-2 aerial part_rep1 (mRNA)
GSM4038516
ski2-2 aerial part_rep2 (mRNA)
GSM4038517
ski2-2 aerial part_rep3 (mRNA)
GSM4038518
ski2-2 dcl2-1 aerial part_rep1 (mRNA)
GSM4038519
ski2-2 dcl2-1 aerial part_rep2 (mRNA)
GSM4038520
ski2-2 dcl2-1 aerial part_rep3 (mRNA)
GSM4038521
ski2-2 dcl4-2 aerial part_rep1 (mRNA)
GSM4038522
ski2-2 dcl4-2 aerial part_rep2 (mRNA)
GSM4038523
ski2-2 dcl4-2 aerial part_rep3 (mRNA)
GSM4038524
ski2-2 dcl4-2 dcl2-1 aerial part_rep1 (mRNA)
GSM4038525
ski2-2 dcl4-2 dcl2-1 aerial part_rep2 (mRNA)
GSM4038526
ski2-2 dcl4-2 dcl2-1 aerial part_rep3 (mRNA)
GSM4038527
Col-0 AGO1 IP aerial part_rep1 (AGO1-associated small RNAs)
GSM4038528
Col-0 AGO1 IP aerial part_rep2 (AGO1-associated small RNAs)
GSM4038529
ein5 dcl4 AGO1 IP aerial part_rep1 (AGO1-associated small RNAs)
GSM4038530
ein5 dcl4 AGO1 IP aerial part_rep2 (AGO1-associated small RNAs)
GSM4038531
ein5 dcl4 dcl2 AGO1 IP aerial part_rep1 (AGO1-associated small RNAs)
GSM4038532
ein5 dcl4 dcl2 AGO1 IP aerial part_rep2 (AGO1-associated small RNAs)
GSM4472991
es3_smRNA_rep1
GSM4472992
es3_smRNA_rep2
GSM4472993
es3_smRNA_rep3
GSM4472994
es3_smRNA_rep4
GSM4472995
es3dd_smRNA_rep1
GSM4472996
es3dd_smRNA_rep2
GSM4472997
es3dd_smRNA_rep3
GSM4472998
es3dd_smRNA_rep4
GSM4472999
Col-0_MS_smRNA_rep1
GSM4473000
Col-0_MS_smRNA_rep2
GSM4473001
Col-0_MS_smRNA_rep3
GSM4473002
dcl4_MS_smRNA_rep1
GSM4473003
dcl4_MS_smRNA_rep2
GSM4473004
dcl4_MS_smRNA_rep3
GSM4473005
dcl4dcl2_MS_smRNA_rep1
GSM4473006
dcl4dcl2_MS_smRNA_rep2
GSM4473007
dcl4dcl2_MS_smRNA_rep3
GSM4473008
Col-0_ABA_smRNA_rep1
GSM4473009
Col-0_ABA_smRNA_rep2
GSM4473010
Col-0_ABA_smRNA_rep3
GSM4473011
dcl4_ABA_smRNA_rep1
GSM4473012
dcl4_ABA_smRNA_rep2
GSM4473013
dcl4_ABA_smRNA_rep3
GSM4473014
dcl4dcl2_ABA_smRNA_rep1
GSM4473015
dcl4dcl2_ABA_smRNA_rep2
GSM4473016
dcl4dcl2_ABA_smRNA_rep3
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE135957
Plant 22-nt siRNAs mediate translational repression and stress adaptation
GSE135959
Plant 22-nt siRNAs mediate translational repression and stress adaptation
GSE135961
Plant 22-nt siRNAs mediate translational repression and stress adaptation
GSE135962
Plant 22-nt siRNAs mediate translational repression and stress adaptation
GSE148512
22-nucleotide siRNAs mediate translational repression and trigger a silencing storm [es]
GSE148513
22-nucleotide siRNAs mediate translational repression and trigger a silencing storm
Relations
BioProject
PRJNA561412
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Format
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