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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 30, 2012 |
| Title |
Illumina HiSeq 2000 (Solanum lycopersicum) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Solanum lycopersicum |
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| Submission date |
Nov 30, 2012 |
| Last update date |
Nov 12, 2013 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (791)
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GSM1047560, GSM1047561, GSM1047562, GSM1047563, GSM1101912, GSM1101913
GSM1101914, GSM1101915, GSM1101916, GSM1101917, GSM1196873, GSM1196874, GSM1196875, GSM1196876, GSM1196877, GSM1196878, GSM1196879, GSM1196880, GSM1196881, GSM1196882, GSM1196883, GSM1196884, GSM1196885, GSM1196886, GSM1196887, GSM1196888, GSM1196889, GSM1196890, GSM1213982, GSM1213983, GSM1213984, GSM1213985, GSM1213986, GSM1213987, GSM1213988, GSM1213989, GSM1213990, GSM1213991, GSM1255895, GSM1255896, GSM1255897, GSM1255898, GSM1262161, GSM1262162, GSM1262163, GSM1262164, GSM1339103, GSM1339104, GSM1365825, GSM1365826, GSM1365827, GSM1365828, GSM1372424, GSM1372425, GSM1372426, GSM1372427, GSM1406253, GSM1406254, GSM1521876, GSM1527352, GSM1527353, GSM1564143, GSM1564144, GSM1564145, GSM1564146, GSM1564147, GSM1564148, GSM1564149, GSM1564150, GSM1564151, GSM1564152, GSM1564153, GSM1564154, GSM1576599, GSM1576600, GSM1576601, GSM1576602, GSM1576603, GSM1576604, GSM1576605, GSM1576606, GSM1576607, GSM1606376, GSM1606377, GSM1611765, GSM1611766, GSM1673886, GSM1673887, GSM1673888, GSM1673889, GSM1673890, GSM1673891, GSM1673892, GSM1673893, GSM1890497, GSM1890498, GSM1890499, GSM1890500, GSM1897197, GSM1897198, GSM1897199, GSM1897200, GSM1897201, GSM1897202, GSM1897203, GSM1897204, GSM1897205, GSM1897206, GSM1905696, GSM1905697, GSM1905698, GSM1905699, GSM1905700, GSM1905701, GSM1905702, GSM1905703, GSM1905704, GSM1905705, GSM1905706, GSM1905707, GSM1905708, GSM1905709, GSM1970275, GSM1970276, GSM1970277, GSM1970278, GSM1970279, GSM1970280, GSM1976413, GSM1976414, GSM2049438, GSM2049439, GSM2068267, GSM2068268, GSM2068269, GSM2068270, GSM2285715, GSM2285716, GSM2285717, GSM2285718, GSM2323489, GSM2323490, GSM2323491, GSM2323492, GSM2337660, GSM2337661, GSM2337662, GSM2337663, GSM2337664, GSM2337665, GSM2337666, GSM2337667, GSM2337668, GSM2337669, GSM2337670, GSM2559478, GSM2559660, GSM2559661, GSM2559668, GSM2559669, GSM2559676, GSM2559677, GSM2746342, GSM2746343, GSM2836228, GSM2836229, GSM2836230, GSM2836231, GSM2836232, GSM2836233, GSM2836234, GSM2836235, GSM2836236, GSM2836237, GSM2836238, GSM2836239, GSM2836240, GSM2836241, GSM2836242, GSM2836243, GSM2948293, GSM2948294, GSM2948295, GSM2948296, GSM2948297, GSM2948298, GSM2948299, GSM2948300, GSM2948301, GSM2948302, GSM2948303, GSM2948304, GSM3243447, GSM3243448, GSM3273111, GSM3273112, GSM3273113, GSM3273114, GSM3273115, GSM3273116, GSM3273117, GSM3273118, GSM3273119, GSM3273120, GSM3273121, GSM3273122, GSM3273123, GSM3273124, GSM3273125, GSM3273126, GSM3273127, GSM3273128, GSM3273129, GSM3273130, GSM3273131, GSM3307877, GSM3307878, GSM3307879, GSM3307880, GSM3308405, GSM3308406, GSM3308407, GSM3308408, GSM3308409, GSM3308410, GSM3308411, GSM3308412, GSM3317953, GSM3317954, GSM3317955, GSM3317956, GSM3317957, GSM3317958, GSM3317959, GSM3317960, GSM3317961, GSM3317962, GSM3317963, GSM3317964, GSM3317965, GSM3317966, GSM3317967, GSM3317968, GSM3317969, GSM3317970, GSM3317971, GSM3317972, GSM3317973, GSM3317974, GSM3317975, GSM3317976, GSM3327805, GSM3327806, GSM3327807, GSM3327808, GSM3327809, GSM3327810, GSM3327811, GSM3327812, GSM3375620, GSM3375621, GSM3375622, GSM3375623, GSM3375624, GSM3375625, GSM3375626, GSM3375627, GSM3375628, GSM3375629, GSM3506347, GSM3506348, GSM3506349, GSM3506350, GSM3506351, GSM3506352, GSM3506353, GSM3506354, GSM3506355, GSM3506356, GSM3506357, GSM3506358, GSM3506359, GSM3506360, GSM3506361, GSM3506362, GSM3506363, GSM3506364, GSM3506365, GSM3506366, GSM3506367, GSM3506368, GSM3506369, GSM3506370, GSM3506371, GSM3506372, GSM3506373, GSM3506374, GSM3506375, GSM3506376, GSM3506377, GSM3506378, GSM3506379, GSM3506380, GSM3506381, GSM3506382, GSM3506383, GSM3506384, GSM3506385, GSM3506386, GSM3506387, GSM3506388, GSM3506389, GSM3506390, GSM3506391, GSM3506392, GSM3506393, GSM3506394, GSM3506395, GSM3506396, GSM3506397, GSM3506398, GSM3506399, GSM3506400, GSM3601261, GSM3601262, GSM3601263, GSM3601264, GSM3601265, GSM3601266, GSM3601267, GSM3601268, GSM3601269, GSM3601270, GSM3601281, GSM3601282, GSM3601283, GSM3601284, GSM3601285, GSM3601286, GSM3601287, GSM3601288, GSM3601289, GSM3601290, GSM3601301, GSM3601302, GSM3601303, GSM3601304, GSM3601305, GSM3601306, GSM3601307, GSM3601308, GSM3601309, GSM3601310, GSM3601321, GSM3601322, GSM3601323, GSM3601324, GSM3601325, GSM3601326, GSM3601327, GSM3601328, GSM3601329, GSM3601330, GSM3601341, GSM3601342, GSM3601343, GSM3601344, GSM3601345, GSM3601346, GSM3601347, GSM3601348, GSM3601349, GSM3601350, GSM3601361, GSM3601362, GSM3601363, GSM3601364, GSM3601365, GSM3601366, GSM3601367, GSM3601368, GSM3601369, GSM3601370, GSM3601381, GSM3601382, GSM3601383, GSM3601384, GSM3601385, GSM3601386, GSM3601387, GSM3601388, GSM3601389, GSM3601390, GSM3601401, GSM3601402, GSM3601403, GSM3601404, GSM3601405, GSM3601406, GSM3601407, GSM3601408, GSM3601409, GSM3601410, GSM3601421, GSM3601422, GSM3601423, GSM3601424, GSM3601425, GSM3601426, GSM3601427, GSM3601428, GSM3601429, GSM3601430, GSM3601441, GSM3601442, GSM3601443, GSM3601444, GSM3601445, GSM3601446, GSM3601447, GSM3601448, GSM3601449, GSM3601450, GSM3601461, GSM3601462, GSM3601463, GSM3601464, GSM3601465, GSM3601466, GSM3601467, GSM3601468, GSM3601469, GSM3601470, GSM3601481, GSM3601482, GSM3601483, GSM3601484, GSM3601485, GSM3601486, GSM3601487, GSM3601488, GSM3601489, GSM3601490, GSM3601501, GSM3601502, GSM3601503, GSM3601504, GSM3601505, GSM3601506, GSM3601507, GSM3601508, GSM3601509, GSM3601510, GSM3601521, GSM3601522, GSM3601523, GSM3601524, GSM3601525, GSM3601526, GSM3601527, GSM3601528, GSM3601529, GSM3601530, GSM3601541, GSM3601542, GSM3601543, GSM3601544, GSM3601545, GSM3601546, GSM3601547, GSM3601548, GSM3601549, GSM3601550, GSM3601561, GSM3601562, GSM3601563, GSM3601564, GSM3601565, GSM3601566, GSM3601567, GSM3601568, GSM3601569, GSM3601570, GSM3601581, GSM3601582, GSM3601583, GSM3601584, GSM3601585, GSM3601586, GSM3601587, GSM3601588, GSM3601589, GSM3601590, GSM3601601, GSM3601602, GSM3601603, GSM3601604, GSM3601605, GSM3601606, GSM3601607...
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| Series (58)
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| GSE42661 |
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis |
| GSE42784 |
Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment |
| GSE45321 |
Genome-wide high-throughput small RNA sequence analysis of B. cinerea-infected tomato leaf and fruit |
| GSE49289 |
Transcriptome profiling of tomato fruits of a FRUITFULL-suppressed line and rin mutant by next generation RNA sequencing |
| GSE50085 |
Characterization and function of Tomato yellow leaf curl virus-derived small RNAs generated in the tolerant and susceptible tomato varieties using deep sequencing |
| GSE51959 |
Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant |
| GSE52265 |
Generation and characterization of a tomato DCL3 silencing mutant |
| GSE55553 |
Simultaneous transcriptome analysis of Colletotrichum gloeosporioides and tomato fruits response reveals novel fungal-fruit arm and defense strategies |
| GSE56610 |
Expression of orthologs of ribosome biogenesis factors in vegetative and reproductive tissues in Solanum lycopersicum |
| GSE56611 |
The composition and function of chaperone networks in Solanum lycopersicum explored by transcriptome sequencing and microarray meta-analysis |
| GSE56974 |
Identification of MicroRNAs and Their Targets in Tomato Infected with Cucumber Mosaic Virus |
| GSE58305 |
Discovering differentially expressed genes in early floral buds of SlREVRis overexpression line and wild type in tomato |
| GSE62196 |
The role of small RNAs on phenotypes in reciprocal hybrids between Solanum lycopersicum and S. pimpinellifolium |
| GSE62462 |
Reprogramming of primary metabolism facilitates metabolic engineering of bioactives in tomato fruit (ChIP-Seq) |
| GSE64087 |
RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants |
| GSE64665 |
Conserved Molecular Program for Root Development in Diverse Plants |
| GSE65788 |
Small RNA profiling during anther development in 7B-1 male-sterile tomato mutant and its wild type |
| GSE65964 |
sRNA profiling between the 7B-1 male-sterile tomato and its wild type in response to abiotic stress |
| GSE68500 |
HsfA2 controls the activity of developmentally and stress-regulated heat stress protection mechanisms in tomato male reproductive tissues |
| GSE73300 |
Expression analysis of CsMYBF1 overexpressing tomato fruit |
| GSE73520 |
Calcium treatment can delay tomato (Solanum lycopersicum L.) fruit senescence |
| GSE73908 |
Transcriptomic difference between the wild type red-fruited tomato and its yellow-fruited mutant |
| GSE75922 |
Genome-wide analysis of Alternaria stress-responsive microRNAs in tomato |
| GSE75923 |
Genome-wide analysis of Alternaria stress-responsive transcriptome in tomato |
| GSE76204 |
Small RNA sequencing in tomato roots with and without Rhizophagus irregularis |
| GSE77340 |
Transcriptome profile analysis of overexpression of SlRBZ results in etiolation and dwarfism by impairing chlorophyll, carotenoid, and gibberellin biosynthesis in tomato |
| GSE78154 |
Tomato plants increase their tolerance to low temperatures in a chilling acclimation process entailing comprehensive transcriptional and metabolic adjustments |
| GSE85859 |
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant |
| GSE87162 |
RNA-seq of Solanum lycopersicum cv. M82 and S. pennellii introgression line 3-5 day old root tip tissue |
| GSE87651 |
Genome-wide identification and characterization of miRNAome from tomato roots (Solanum lycopersicum) and root-knot nematode (Meloidogyne incognita) during susceptible and resistant interactions. |
| GSE97192 |
Paramutation of natural epialleles in tomato [BiSulfite-seq] |
| GSE97206 |
Paramutation of natural epialleles in tomato [sRNA] |
| GSE97247 |
Paramutation of natural epialleles in tomato |
| GSE102781 |
Genome-wide comparative analysis in Solanaceae plants reveals evolution of novel miRNAs targeting defense genes in Capsicum spp. |
| GSE106337 |
Exploring the sound-modulated delay in tomato ripening through expression analysis of RNA. |
| GSE109672 |
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen |
| GSE116581 |
fruitENCODE: An encyclopedia of DNA elements for fruit ripening |
| GSE117185 |
Transcriptomic analysis of tomato sperm cell lineage development |
| GSE117733 |
Comparative transcriptome profiling of tomato (Solanum lycopersicum L.) pollen grains during maturation and in response to acquired thermotolerance conditions |
| GSE117766 |
Different gene expression in the tomato trichome and leaf |
| GSE118065 |
Gene expression in the tomato trichome collected from af mutant and its complemented lines |
| GSE119492 |
Genome-wide binding analysis of SlDof1 in tomato fruit |
| GSE119493 |
RNA sequencing Reveals the Differentially Expressed Genes between Wild-type and SlDof1-RNAi Fruits |
| GSE119565 |
Regulatory network of SlDof1 in fruit ripening |
| GSE123543 |
A pathogen-responsive gene cluster for the production of highly modified fatty acids in tomato |
| GSE126430 |
Translational regulation contributes to the elevated CO2 response in two Solanum species |
| GSE128739 |
Modeling protein destiny in developing tomato fruit |
| GSE131700 |
Graft junction transcriptome between tomato and pepper over time |
| GSE140853 |
Sulfoxidation modification of NON-RIPENING (NOR) transcription factor is involved in the regulation of fruit ripening in tomato |
| GSE142606 |
Transcription profiling of tomato plants overexpressing SlMYB14 |
| GSE152620 |
Synchronization and interaction of proline, ascorbate and oxidative stress pathways under abiotic stress combination in tomato plants |
| GSE156398 |
RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development |
| GSE161505 |
Transcriptional analysis on the effect of the overexpression of VvSUC11,VvSUC12,or VvSUC27 in tomato on the growth of fruit |
| GSE214195 |
35S:TRAP of S. lycopersicum and S. pennellii roots under phosphate-deprivation |
| GSE225098 |
Circadian regulation of genes contributed by rapid RNA turnover in tomato |
| GSE226856 |
Chilling stress drives organ specific transcriptional cascades and dampens diurnal oscillation in Tomato |
| GSE232485 |
Transcriptome analysis of wild type, slbd40 and slwrky37 tomato seeds after imbibition. |
| GSE233233 |
Transcriptome analysis showed that tomato-rootstock enhanced salt tolerance of grafted seedlings was accompanied by multiple metabolic processes and gene differences |
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| Supplementary data files not provided |
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