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Series GSE126430 Query DataSets for GSE126430
Status Public on Nov 26, 2019
Title Translational regulation contributes to the elevated CO2 response in two Solanum species
Organisms Solanum lycopersicum; Solanum pennellii
Experiment type Expression profiling by high throughput sequencing
Other
Summary A systems-level study identifies inter-specific translational regulation as important in the elevated CO2 response in two Solanum species
 
Overall design RNA-Seq and TRAP-Seq data from S. lycopersicum and S. pennellii from roots or shoots, at 3 developmental stages (6,9 and 12 days after planting), under elevated (700ppm) or ambient (400ppm) CO2 conditions.
 
Contributor(s) Gray SB, Rodriguez-Medina J, Rusoff S, Toal TW, Kajala K, Runcie D, Brady SM
Citation(s) 31797460
Submission date Feb 12, 2019
Last update date Feb 25, 2020
Contact name Siobhan Brady
Organization name UC Davis
Department GBSF
Lab Brady lab
Street address 451 Health Sciences Drive, 4303 GBSF
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (2)
GPL16345 Illumina HiSeq 2000 (Solanum lycopersicum)
GPL22467 Illumina HiSeq 2000 (Solanum pennellii)
Samples (512)
GSM3601261 R2_D06_amb_M82_root_Pool1_LnRep1 (RNA-Seq)
GSM3601262 R2_D06_amb_M82_root_Pool2_LnRep1 (RNA-Seq)
GSM3601263 R2_D06_amb_M82_root_Pool2_LnRep2 (RNA-Seq)
Relations
BioProject PRJNA521877
SRA SRP185636

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE126430_RAW.tar 64.7 Mb (http)(custom) TAR (of TXT)
GSE126430_TRAP_RawGeneCounts.csv.gz 993.8 Kb (ftp)(http) CSV
GSE126430_total_unaggregated-480techreps_RawGeneCounts.csv.gz 9.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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