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| Status |
Public on Jul 24, 2023 |
| Title |
Chilling stress drives organ specific transcriptional cascades and dampens diurnal oscillation in Tomato |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This study assayed the gene expression changes in response to chilling stress in the shoots and roots of tomato seedlings. Both a pretreatment and a concurrent ambient control were sampled to contrast gene expression.
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| Overall design |
Tomato seedlings were grown for 18 days in a hydroponic setup and split into two groups. One group remained at 24C while the other group was moved to 4C. Shoots and roots were sampled (3 replicates) from seedlings prior to start of treatment, from shoots at 30 minutes after treatment and from shoots and roots after 3 hours of treatment.
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| Web link |
http:// https://doi.org/10.1093/hr/uhad137
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| Contributor(s) |
Varala K |
| Citation(s) |
37564269 |
| Submission date |
Mar 07, 2023 |
| Last update date |
Oct 23, 2023 |
| Contact name |
Kranthi Varala |
| E-mail(s) |
kvarala@purdue.edu
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| Organization name |
Purdue University
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| Department |
Horticulture and Landscape Architecture
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| Street address |
625 Agriculture Mall Dr.
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| City |
West Lafayette |
| State/province |
IN |
| ZIP/Postal code |
47907 |
| Country |
USA |
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| Platforms (2) |
| GPL16345 |
Illumina HiSeq 2000 (Solanum lycopersicum) |
| GPL27957 |
Illumina NovaSeq 6000 (Solanum lycopersicum) |
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| Samples (27)
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| GSM7085891 |
Root, pretreatment, replicate 1 [Rt_000_1] |
| GSM7085892 |
Root, pretreatment, replicate 2 [Rt_000_2] |
| GSM7085893 |
Root, pretreatment, replicate 3 [Rt_000_3] |
| GSM7085894 |
Root, Cold, 3hours, replicate 1 [Rt_180_Cold_1] |
| GSM7085895 |
Root, Cold, 3hours, replicate 2 [Rt_180_Cold_2] |
| GSM7085896 |
Root, Cold, 3hours, replicate 3 [Rt_180_Cold_3] |
| GSM7085897 |
Root, Warm, 3hours, replicate 1 [Rt_180_Warm_1] |
| GSM7085898 |
Root, Warm, 3hours, replicate 2 [Rt_180_Warm_2] |
| GSM7085899 |
Root, Warm, 3hours, replicate 3 [Rt_180_Warm_3] |
| GSM7085900 |
Shoot, pretreatment, replicate 1 [Sh_000_1] |
| GSM7085901 |
Shoot, pretreatment, replicate 2 [Sh_000_2] |
| GSM7085902 |
Shoot, pretreatment, replicate 3 [Sh_000_3] |
| GSM7085903 |
Shoot, pretreatment, replicate 4 [Sh_000_4] |
| GSM7085904 |
Shoot, pretreatment, replicate 5 [Sh_000_5] |
| GSM7085905 |
Shoot, pretreatment, replicate 6 [Sh_000_6] |
| GSM7085906 |
Shoot, Cold, 30minutes, replicate 1 [Sh_030_Cold_1] |
| GSM7085907 |
Shoot, Cold, 30minutes, replicate 2 [Sh_030_Cold_2] |
| GSM7085908 |
Shoot, Cold, 30minutes, replicate 3 [Sh_030_Cold_3] |
| GSM7085909 |
Shoot, Warm, 30minutes, replicate 1 [Sh_030_Warm_1] |
| GSM7085910 |
Shoot, Warm, 30minutes, replicate 2 [Sh_030_Warm_2] |
| GSM7085911 |
Shoot, Warm, 30minutes, replicate 3 [Sh_030_Warm_3] |
| GSM7085912 |
Shoot, Cold, 3hours, replicate 1 [Sh_180_Cold_1] |
| GSM7085913 |
Shoot, Cold, 3hours, replicate 2 [Sh_180_Cold_2] |
| GSM7085914 |
Shoot, Cold, 3hours, replicate 3 [Sh_180_Cold_3] |
| GSM7085915 |
Shoot, Warm, 3hours, replicate 1 [Sh_180_Warm_1] |
| GSM7085916 |
Shoot, Warm, 3hours, replicate 2 [Sh_180_Warm_2] |
| GSM7085917 |
Shoot, Warm, 3hours, replicate 3 [Sh_180_Warm_3] |
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| Relations |
| BioProject |
PRJNA941890 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE226856_Root_wO_TMM.txt.gz |
768.7 Kb |
(ftp)(http) |
TXT |
| GSE226856_Shoot_wO_TMM.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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