|
| Status |
Public on Sep 14, 2020 |
| Title |
RNA-Seq analysis of genes affected by Cyclophilin A/DIAGEOTROPICA (DGT) in tomato root development |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Cyclophilin A/DIAGEOTROPICA (DGT) has been linked to auxin-regulated development in tomato and appears to affect multiple developmental pathways. Loss of DGT function results in a pleiotropic phenotype that is strongest in the roots, including shortened roots with no lateral branching. Here, we present an RNA-Seq dataset comparing the gene expression profiles of wildtype (Ailsa Craig variety) and dgt tissues from three spatially separated developmental stages of the root tip (differentiation zone, elongation zone, and meristem), with three replicates for each tissue and genotype.
|
| |
|
| Overall design |
RNA-Seq of tissues from three root developmental zones in WT and dgt tomato plants, with three replicates for each tissue and genotype.
|
| |
|
| Contributor(s) |
Ivanchenko M, Megraw M, Ozguc OR |
| Citation(s) |
33123350 |
| |
| Submission date |
Aug 18, 2020 |
| Last update date |
Nov 02, 2020 |
| Contact name |
Molly Megraw |
| E-mail(s) |
megrawm@science.oregonstate.edu
|
| Organization name |
Oregon State University
|
| Street address |
2082 Cordley Hall
|
| City |
Corvallis |
| State/province |
Oregon |
| ZIP/Postal code |
97331 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16345 |
Illumina HiSeq 2000 (Solanum lycopersicum) |
|
| Samples (18)
|
|
| Relations |
| BioProject |
PRJNA657824 |
| SRA |
SRP277916 |
Less...
More...