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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 27, 2005 |
| Title |
Affymetrix RML Custom Pathogenic chip 1 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Borreliella burgdorferi; Yersinia pestis; Coxiella burnetii; Chlamydia trachomatis; Staphylococcus aureus; Streptococcus pyogenes |
| |
|
| Description |
Measurements of S.aureus gene expression during S.aureus-PMN interaction
|
| |
|
| Contributor(s) |
Voyich JM, Braughton KR, Sturdevant DE, Whitney AR, Said-Salim B, Porcella SF, Long DR, Dorward DW, Gardner DJ, Kreiswirth BN, Musser JM, DeLeo FR |
| Submission date |
May 25, 2005 |
| Last update date |
Oct 16, 2018 |
| Contact name |
Dan Sturdevant |
| E-mail(s) |
dsturdevant@niaid.nih.gov
|
| Phone |
4063639248
|
| Organization name |
NIH
|
| Department |
NIAID
|
| Lab |
RTS
|
| Street address |
903 S 4th street
|
| City |
Hamilton |
| State/province |
MT |
| ZIP/Postal code |
59840 |
| Country |
USA |
| |
|
| Samples (697)
|
GSM52697, GSM52698, GSM52699, GSM52700, GSM52701, GSM52702
GSM52703, GSM52704, GSM52705, GSM52706, GSM52707, GSM52708, GSM52709, GSM52710, GSM52711, GSM52712, GSM52713, GSM52714, GSM52715, GSM52716, GSM52717, GSM52718, GSM52719, GSM52720, GSM52721, GSM52722, GSM52723, GSM52724, GSM52725, GSM52726, GSM52727, GSM52728, GSM52729, GSM52730, GSM52731, GSM52732, GSM52733, GSM52734, GSM52735, GSM52736, GSM52737, GSM52738, GSM52739, GSM52740, GSM52741, GSM52742, GSM52743, GSM52744, GSM52745, GSM52746, GSM52747, GSM52748, GSM52749, GSM52750, GSM52751, GSM52752, GSM52753, GSM52754, GSM52755, GSM52756, GSM52757, GSM52758, GSM52759, GSM52760, GSM52761, GSM52762, GSM52763, GSM52764, GSM52765, GSM52766, GSM52767, GSM52768, GSM52769, GSM52770, GSM52771, GSM52772, GSM52773, GSM52774, GSM52775, GSM52776, GSM52777, GSM52778, GSM52779, GSM52780, GSM52781, GSM52782, GSM52783, GSM52784, GSM52785, GSM52786, GSM52787, GSM52788, GSM52789, GSM52790, GSM52791, GSM52792, GSM52793, GSM52794, GSM52795, GSM52796, GSM52797, GSM52798, GSM52799, GSM52800, GSM52801, GSM52802, GSM52803, GSM52804, GSM52805, GSM52806, GSM52807, GSM52808, GSM52809, GSM52810, GSM52811, GSM52812, GSM52813, GSM52814, GSM52815, GSM52816, GSM52817, GSM52818, GSM52819, GSM52820, GSM52821, GSM52822, GSM52823, GSM52824, GSM52825, GSM52826, GSM52827, GSM52828, GSM52829, GSM52830, GSM52831, GSM52832, GSM52833, GSM52834, GSM52835, GSM52836, GSM52837, GSM52838, GSM52839, GSM52840, GSM52841, GSM52842, GSM52843, GSM52844, GSM52845, GSM52846, GSM52847, GSM52848, GSM52849, GSM52850, GSM52851, GSM52852, GSM52853, GSM52854, GSM52855, GSM61507, GSM61508, GSM61509, GSM61510, GSM61511, GSM61512, GSM61513, GSM61514, GSM61515, GSM61516, GSM61517, GSM61518, GSM61519, GSM61520, GSM61521, GSM61522, GSM61523, GSM61524, GSM61525, GSM61526, GSM61527, GSM61528, GSM61529, GSM61530, GSM61531, GSM61532, GSM61533, GSM61534, GSM61535, GSM61536, GSM61537, GSM61538, GSM61539, GSM61540, GSM61541, GSM61542, GSM61543, GSM61544, GSM61545, GSM61546, GSM61547, GSM61548, GSM61549, GSM61550, GSM61551, GSM61552, GSM61553, GSM61554, GSM61555, GSM61556, GSM61557, GSM61558, GSM61559, GSM61560, GSM61561, GSM61562, GSM61563, GSM61564, GSM61565, GSM61566, GSM61567, GSM61568, GSM61569, GSM61570, GSM61571, GSM61572, GSM61573, GSM61574, GSM61575, GSM61576, GSM61577, GSM61578, GSM61579, GSM61580, GSM61581, GSM61582, GSM61583, GSM61584, GSM61585, GSM61586, GSM61587, GSM61588, GSM61589, GSM61590, GSM61591, GSM61592, GSM61593, GSM61594, GSM61595, GSM61596, GSM61597, GSM61598, GSM61599, GSM61600, GSM61601, GSM61602, GSM61603, GSM61604, GSM61605, GSM61606, GSM61607, GSM61608, GSM61609, GSM61610, GSM61611, GSM61612, GSM61613, GSM61614, GSM61615, GSM61616, GSM61617, GSM61618, GSM61619, GSM61620, GSM61621, GSM61622, GSM61623, GSM61624, GSM61625, GSM61626, GSM61627, GSM61628, GSM61629, GSM61630, GSM61631, GSM61632, GSM61633, GSM61634, GSM61635, GSM61636, GSM61637, GSM61638, GSM61639, GSM61640, GSM61641, GSM61642, GSM61643, GSM61644, GSM61645, GSM61646, GSM61647, GSM61648, GSM61649, GSM61650, GSM61651, GSM61652, GSM61653, GSM61654, GSM61655, GSM61656, GSM61657, GSM61658, GSM61659, GSM61660, GSM61661, GSM61662, GSM61663, GSM61664, GSM61665, GSM61666, GSM61667, GSM61668, GSM61669, GSM61670, GSM61671, GSM61672, GSM61673, GSM61674, GSM61675, GSM61676, GSM61677, GSM61678, GSM61679, GSM61680, GSM61681, GSM61682, GSM61683, GSM61684, GSM61685, GSM61686, GSM61687, GSM61688, GSM61689, GSM61690, GSM61691, GSM61692, GSM61693, GSM61694, GSM61695, GSM61696, GSM61697, GSM61698, GSM61699, GSM61700, GSM61701, GSM61702, GSM61703, GSM61704, GSM61705, GSM61706, GSM61707, GSM61708, GSM61709, GSM61710, GSM61711, GSM61712, GSM61713, GSM61714, GSM61715, GSM61716, GSM61717, GSM61718, GSM61719, GSM61720, GSM61721, GSM61722, GSM61723, GSM61724, GSM61725, GSM61726, GSM61727, GSM61728, GSM61729, GSM61730, GSM61731, GSM61732, GSM61733, GSM61734, GSM61735, GSM61736, GSM61737, GSM61738, GSM61739, GSM61740, GSM61741, GSM61742, GSM61743, GSM61744, GSM61745, GSM61746, GSM61747, GSM61748, GSM61749, GSM61750, GSM61751, GSM61752, GSM61753, GSM61754, GSM61755, GSM61756, GSM61757, GSM61758, GSM61759, GSM61760, GSM61761, GSM61762, GSM61763, GSM61764, GSM61765, GSM87245, GSM87246, GSM87247, GSM87248, GSM87249, GSM87250, GSM87251, GSM87252, GSM87253, GSM87254, GSM87255, GSM87256, GSM87257, GSM87258, GSM87259, GSM87260, GSM87261, GSM87262, GSM87263, GSM87264, GSM87265, GSM87266, GSM87267, GSM87268, GSM87269, GSM87270, GSM87271, GSM87272, GSM87273, GSM87274, GSM89431, GSM89432, GSM89433, GSM89434, GSM89435, GSM89436, GSM89437, GSM89438, GSM89439, GSM89440, GSM89441, GSM89442, GSM89443, GSM89444, GSM89445, GSM89446, GSM89447, GSM89448, GSM89449, GSM89450, GSM89451, GSM89452, GSM89453, GSM89454, GSM89455, GSM89456, GSM89457, GSM89458, GSM89459, GSM89460, GSM89461, GSM89462, GSM89463, GSM89464, GSM89465, GSM89466, GSM89467, GSM89468, GSM89469, GSM89470, GSM89471, GSM89472, GSM89473, GSM89474, GSM89475, GSM89476, GSM89477, GSM89478, GSM90455, GSM90456, GSM90457, GSM90458...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
|
| Series (17)
|
| GSE2713 |
Longitudinal analysis of the group A Streptococcus transcriptome |
| GSE2728 |
S. aureus gene expression during growth phase and/or S. aureus–PMN interaction |
| GSE3793 |
Comparison of Yersinia pestis from rat buboes and laboratory cultures |
| GSE3899 |
GAS gene expression from mouse-passaged and clinical GAS strains |
| GSE3900 |
GAS gene expression from clinical samples |
| GSE3966 |
Expression comparison of GAS M3 strains MGAS315 & MGAS9887 in exponential growth |
| GSE8219 |
Global transcriptome analysis of B. burgdorferi during adherence and invasion of human neuroglial cells |
| GSE8677 |
Panton-Valentine Leukocidin Does Not Impact Virulence of Community-associated MRSA |
| GSE10187 |
Genome-scale analysis of Staphylococcus aureus reveals host-specific diversification of the core genome. |
| GSE10252 |
Comparison of gene expression in MGAS315 and its isogenc mtsR mutant |
| GSE13338 |
Host cell-free growth of the Q fever bacterium Coxiella burnetii |
| GSE16124 |
Determination of transcriptome of SptR in group A Streptococcus during growth in human saliva |
| GSE16436 |
Transcriptomes of covR/S mutant strains of S. pyogenes |
| GSE16493 |
Preadaptation of Yersinia pestis to resist mammalian innate immunity during transit through the flea vector |
| GSE51366 |
Genome-wide analysis of the regulatory function mediated by the small regulatory psm-mec RNA of methicillin-resistant Staphylococcus aureus |
| GSE61558 |
Role of the PhoP-PhoQ Gene Regulatory System in Adaptation of Yersinia pestis to Environmental Stress in the Flea Digestive Tract |
| GSE119023 |
DksA controls the response of the Lyme disease spirochete Borrelia burgdorferi to starvation |
|
| Data table header descriptions |
| ID |
|
| feature id |
feature identification |
| DESCRIPTION |
annotation of gene |
| GENE_SYN |
synonym of gene |
| PID |
protein identification number |
| SOURCE |
|
| ORGANISM |
organism |
| ORF |
open reading frame |
| ORF |
gene symbol |
| SPOT_ID |
|
| Data table |
| ID |
feature id |
DESCRIPTION |
GENE_SYN |
PID |
SOURCE |
ORGANISM |
ORF |
ORF |
SPOT_ID |
| AFFX-BioB-5_at |
1 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioB-M_at |
2 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioB-3_at |
3 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioC-5_at |
4 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioC-3_at |
5 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioDn-5_at |
6 |
control |
control |
control |
|
|
|
|
control |
| AFFX-BioDn-3_at |
7 |
control |
control |
control |
|
|
|
|
control |
| AFFX-CreX-5_at |
8 |
control |
control |
control |
|
|
|
|
control |
| AFFX-CreX-3_at |
9 |
control |
control |
control |
|
|
|
|
control |
| AFFX-DapX-5_at |
10 |
control |
control |
control |
|
|
|
|
control |
| AFFX-DapX-M_at |
11 |
control |
control |
control |
|
|
|
|
control |
| AFFX-DapX-3_at |
12 |
control |
control |
control |
|
|
|
|
control |
| AFFX-LysX-5_at |
13 |
control |
control |
control |
|
|
|
|
control |
| AFFX-LysX-M_at |
14 |
control |
control |
control |
|
|
|
|
control |
| AFFX-LysX-3_at |
15 |
control |
control |
control |
|
|
|
|
control |
| AFFX-PheX-5_at |
16 |
control |
control |
control |
|
|
|
|
control |
| AFFX-PheX-M_at |
17 |
control |
control |
control |
|
|
|
|
control |
| AFFX-PheX-3_at |
18 |
control |
control |
control |
|
|
|
|
control |
| AFFX-ThrX-5_at |
19 |
control |
control |
control |
|
|
|
|
control |
| AFFX-ThrX-M_at |
20 |
control |
control |
control |
|
|
|
|
control |
Total number of rows: 15720
Table truncated, full table size 3683 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL2129.cdf.gz |
2.7 Mb |
(ftp)(http) |
CDF |
|
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|
|
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