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GEO accession:
Sample GSM87253
Query DataSets for GSM87253
Status
Public on Jul 28, 2006
Title
stationary 37C replicate 3
Sample type
RNA
Source name
stationary 37C
Organism
Yersinia pestis
Characteristics
stationary 37C
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
P. aeruginosa
Scan protocol
RML-chipa510998 custom
Description
rat bubo compared to 21C exp; 21C sta; 37C exp; 37C sta
Data processing
Affymetrix GCOS v 1.1
Submission date
Dec 08, 2005
Last update date
Jul 28, 2006
Contact name
Dan Sturdevant
E-mail(s)
dsturdevant@niaid.nih.gov
Phone
4063639248
Organization name
NIH
Department
NIAID
Lab
RTS
Street address
903 S 4th street
City
Hamilton
State/province
MT
ZIP/Postal code
59840
Country
USA
Platform ID
GPL2129
Series (1)
GSE3793
Comparison of Yersinia pestis from rat buboes and laboratory cultures
Data table header descriptions
ID_REF
feature identification
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call that indicates if the probe set was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
823.6
P
0.00011
AFFX-BioB-M_at
1392.9
P
0.00007
AFFX-BioB-3_at
1404.7
P
0.00011
AFFX-BioC-5_at
2027.3
P
0.000044
AFFX-BioC-3_at
1106.5
P
0.00007
AFFX-BioDn-5_at
1521.7
P
0.000081
AFFX-BioDn-3_at
4647.9
P
0.000052
AFFX-CreX-5_at
786
P
0.000446
AFFX-CreX-3_at
12475.4
P
0.000095
AFFX-DapX-5_at
88.8
P
0.030976
AFFX-DapX-M_at
32.4
A
0.354453
AFFX-DapX-3_at
61.5
P
0.004998
AFFX-LysX-5_at
28.1
A
0.239063
AFFX-LysX-M_at
18.2
A
0.5
AFFX-LysX-3_at
3
A
0.772364
AFFX-PheX-5_at
25.7
A
0.5
AFFX-PheX-M_at
34.1
A
0.147939
AFFX-PheX-3_at
46.5
A
0.340661
AFFX-ThrX-5_at
72.9
P
0.00762
AFFX-ThrX-M_at
50
A
0.185131
Total number of rows:
15720
Table truncated, full table size
564 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM87253.CEL.gz
2.9 Mb
(ftp)
(http)
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