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GEO accession:
Sample GSM87273
Query DataSets for GSM87273
Status
Public on Jul 28, 2006
Title
stationary 21C replicate 5
Sample type
RNA
Source name
stationary 21C
Organism
Yersinia pestis
Characteristics
stationary 21C
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
P. aeruginosa
Scan protocol
RML-chipa510998 custom
Description
rat bubo compared to 21C exp; 21C sta; 37C exp; 37C sta
Data processing
Affymetrix GCOS v 1.1
Submission date
Dec 08, 2005
Last update date
Jul 28, 2006
Contact name
Dan Sturdevant
E-mail(s)
dsturdevant@niaid.nih.gov
Phone
4063639248
Organization name
NIH
Department
NIAID
Lab
RTS
Street address
903 S 4th street
City
Hamilton
State/province
MT
ZIP/Postal code
59840
Country
USA
Platform ID
GPL2129
Series (1)
GSE3793
Comparison of Yersinia pestis from rat buboes and laboratory cultures
Data table header descriptions
ID_REF
feature identification
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call that indicates if the probe set was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
734.2
P
0.000044
AFFX-BioB-M_at
1299.6
P
0.000044
AFFX-BioB-3_at
1351.6
P
0.000044
AFFX-BioC-5_at
2373.7
P
0.000044
AFFX-BioC-3_at
940.4
P
0.000044
AFFX-BioDn-5_at
1829.6
P
0.000052
AFFX-BioDn-3_at
10838.8
P
0.000044
AFFX-CreX-5_at
11608
P
0.000044
AFFX-CreX-3_at
19221.8
P
0.000044
AFFX-DapX-5_at
65
M
0.050229
AFFX-DapX-M_at
54.2
P
0.012547
AFFX-DapX-3_at
106.9
P
0.000169
AFFX-LysX-5_at
18.6
A
0.287726
AFFX-LysX-M_at
22.3
A
0.139462
AFFX-LysX-3_at
10.5
A
0.544587
AFFX-PheX-5_at
14.4
A
0.340661
AFFX-PheX-M_at
29.5
P
0.039661
AFFX-PheX-3_at
20.4
A
0.5
AFFX-ThrX-5_at
71.1
P
0.002023
AFFX-ThrX-M_at
28.6
M
0.058444
Total number of rows:
15720
Table truncated, full table size
563 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM87273.CEL.gz
3.0 Mb
(ftp)
(http)
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