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GEO accession:
Sample GSM87245
Query DataSets for GSM87245
Status
Public on Jul 28, 2006
Title
bubo from rat replicate 1
Sample type
RNA
Source name
bubo from rat
Organism
Yersinia pestis
Characteristics
bubo from rat
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
P. aeruginosa
Scan protocol
RML-chipa510998 custom
Description
rat bubo compared to 21C exp; 21C sta; 37C exp; 37C sta
Data processing
Affymetrix GCOS v 1.1
Submission date
Dec 08, 2005
Last update date
Jul 28, 2006
Contact name
Dan Sturdevant
E-mail(s)
dsturdevant@niaid.nih.gov
Phone
4063639248
Organization name
NIH
Department
NIAID
Lab
RTS
Street address
903 S 4th street
City
Hamilton
State/province
MT
ZIP/Postal code
59840
Country
USA
Platform ID
GPL2129
Series (1)
GSE3793
Comparison of Yersinia pestis from rat buboes and laboratory cultures
Data table header descriptions
ID_REF
feature identification
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call that indicates if the probe set was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
587.1
P
0.00034
AFFX-BioB-M_at
1409.1
P
0.000127
AFFX-BioB-3_at
1261.4
P
0.006187
AFFX-BioC-5_at
2693.2
P
0.000052
AFFX-BioC-3_at
1456.8
P
0.000044
AFFX-BioDn-5_at
2113.4
P
0.000662
AFFX-BioDn-3_at
12090.8
P
0.000044
AFFX-CreX-5_at
20505.8
P
0.000052
AFFX-CreX-3_at
25932.7
P
0.000044
AFFX-DapX-5_at
3082.8
P
0.000044
AFFX-DapX-M_at
4601.0
P
0.000052
AFFX-DapX-3_at
4590.4
P
0.000044
AFFX-LysX-5_at
358.7
P
0.000127
AFFX-LysX-M_at
336.2
P
0.000095
AFFX-LysX-3_at
178.4
M
0.050229
AFFX-PheX-5_at
905.3
P
0.00007
AFFX-PheX-M_at
631.3
P
0.000081
AFFX-PheX-3_at
401.5
P
0.013811
AFFX-ThrX-5_at
2611.7
P
0.000052
AFFX-ThrX-M_at
2356.3
P
0.000044
Total number of rows:
15720
Table truncated, full table size
568 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM87245.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
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