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GEO accession:
Sample GSM87266
Query DataSets for GSM87266
Status
Public on Jul 28, 2006
Title
exponential 37C replicate 4
Sample type
RNA
Source name
exponential 37C
Organism
Yersinia pestis
Characteristics
exponential 37C
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label
biotin
Label protocol
Approximately 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
P. aeruginosa
Scan protocol
RML-chipa510998 custom
Description
rat bubo compared to 21C exp; 21C sta; 37C exp; 37C sta
Data processing
Affymetrix GCOS v 1.1
Submission date
Dec 08, 2005
Last update date
Jul 28, 2006
Contact name
Dan Sturdevant
E-mail(s)
dsturdevant@niaid.nih.gov
Phone
4063639248
Organization name
NIH
Department
NIAID
Lab
RTS
Street address
903 S 4th street
City
Hamilton
State/province
MT
ZIP/Postal code
59840
Country
USA
Platform ID
GPL2129
Series (1)
GSE3793
Comparison of Yersinia pestis from rat buboes and laboratory cultures
Data table header descriptions
ID_REF
feature identification
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call that indicates if the probe set was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
475.2
P
0.000044
AFFX-BioB-M_at
794.5
P
0.00006
AFFX-BioB-3_at
796.5
P
0.000044
AFFX-BioC-5_at
1444.7
P
0.000044
AFFX-BioC-3_at
570.4
P
0.000044
AFFX-BioDn-5_at
967.4
P
0.000052
AFFX-BioDn-3_at
9005.1
P
0.000052
AFFX-CreX-5_at
5932.8
P
0.000044
AFFX-CreX-3_at
13054.5
P
0.000044
AFFX-DapX-5_at
73.2
P
0.010317
AFFX-DapX-M_at
46.6
M
0.058444
AFFX-DapX-3_at
61.8
P
0.000856
AFFX-LysX-5_at
14.8
A
0.123552
AFFX-LysX-M_at
2
A
0.891021
AFFX-LysX-3_at
9.2
A
0.659339
AFFX-PheX-5_at
12.5
A
0.368438
AFFX-PheX-M_at
8.5
A
0.262809
AFFX-PheX-3_at
4.8
A
0.804734
AFFX-ThrX-5_at
38
P
0.002867
AFFX-ThrX-M_at
14
A
0.165861
Total number of rows:
15720
Table truncated, full table size
561 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM87266.CEL.gz
2.8 Mb
(ftp)
(http)
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