GSE34654 |
Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana. |
GSE34840 |
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana |
GSE35288 |
Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq |
GSE35408 |
Brassinosteroid, gibberellin, and phytochrome impinge on a common transcription module in Arabidopsis |
GSE35479 |
Nucleotidyltransferase gene HESO1 |
GSE35562 |
Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC |
GSE36129 |
An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [leaves RNA-seq] |
GSE36143 |
An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis [BS-seq] |
GSE36148 |
An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis |
GSE36469 |
High-thoughput Illumina RNA sequencing to identify downstream target genes of RABBIT EARS (RBE) in the flowers of Arabidopsis thaliana |
GSE36846 |
Selection of epigenetic variation in Arabidopsis |
GSE37075 |
Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons |
GSE37159 |
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [RNA-seq] |
GSE37160 |
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses |
GSE37644 |
MORC family ATPases required for heterochromatin condensation and gene silencing |
GSE38286 |
DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. |
GSE38400 |
A SWI/SNF nucleosome remodeling complex acts in non-coding RNA-mediated transcriptional silencing |
GSE38401 |
Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing (MNase-Seq) |
GSE38464 |
Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing |
GSE38612 |
Identification of long ncRNAs using RNA-seq in Arabidopsis |
GSE38879 |
Identification of RVE8 target genes |
GSE38935 |
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes |
GSE39045 |
Deposition of histone variant H2A.Z within gene bodies regulates responsive genes |
GSE39051 |
Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein, regulates plant flowering by targeted alternative polyadenylation |
GSE39097 |
Dual Binding of Chromomethylase Domains to H3K9me2-containing Nucleosomes Mediates DNA Methylation in Plants |
GSE39214 |
Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis [RNA-Seq] |
GSE39217 |
Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis |
GSE39247 |
The DDR complex facilitates the genome-wide association of RNA Polymerase V to promoters and evolutionarily young transposons |
GSE39405 |
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner |
GSE39463 |
Time-course RNA-seq analysis of the barley MLA1 immune receptor-mediated response to barley powdery mildew fungus Bgh in Arabidopsis thaliana |
GSE39901 |
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. |
GSE40044 |
Small RNA sequencing from Arabidopsis adult leaves and profiling of Arabidopsis transcripts in response to flg22 peptide |
GSE40209 |
Regulatory impact of RNA secondary structure across the Arabidopsis thaliana transcriptome |
GSE40216 |
Study of expression changes and alternative splicing events during RPS4-mediated resistance in Arabidopsis using a temperature-inducible system which mirrors pathogen-infection |
GSE40256 |
Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Transcript immunoprecipitation |
GSE40258 |
Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant: Small RNA immunoprecipitation |
GSE40259 |
Functional analysis of Arabidopsis ARGONAUTE1 using a slicer-defective mutant |
GSE40388 |
Transcription profiling of Arabidopsis plants overexpressing SlHsfA3 |
GSE40482 |
Transcription profiling of Arabidopsis plants overexpressing SsCBF1 |
GSE40501 |
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. |
GSE40579 |
RACK1 function in the miRNA pathway |
GSE41143 |
Nucleosome remodeling by the SWI/SNF complex in non-coding RNA-mediated transcriptional gene silencing (ChIP-seq) |
GSE41302 |
DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis |
GSE41766 |
A triple-HLH/bHLH Cascade Controls Cell Elongation Downstream of Multiple Hormonal and Environmental Signaling Pathways |
GSE42665 |
Transcriptome-wide analysis of gene expression in dark-grown WT and pif mutant seedlings |
GSE42899 |
Magnesium Availability Regulates Development of Root Hairs in Arabidopsis thaliana |
GSE42957 |
Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific incompatibility |
GSE42968 |
Differentially regulated genes in TOR knockdown Arabidopsis lines |
GSE43283 |
Genome-wide identification of PIF1-binding sites and direct-target genes of PIF1 transcriptional regulation in skotomorphogenesis |
GSE43284 |
Genome-wide identification of PIF4-binding sites and direct-target genes of PIF4 transcriptional regulation in skotomorphogenesis |
GSE43286 |
Genome-wide identification of PIF-binding sites and direct-target genes of PIF transcriptional regulation in skotomorphogenesis |
GSE43412 |
Reconstructing de novo silencing of an active plant retrotransposon: dynamics, mechanisms, biological implications |
GSE43560 |
Allele-specific expression in A. thaliana hybrids grown under control and drought stress conditions |
GSE43616 |
Time-course transcriptome of wild-type Arabidopsis leaf |
GSE43703 |
Translational landscape of photomorphogenic Arabidopsis |
GSE43983 |
Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis |
GSE44209 |
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV |
GSE44417 |
Whole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type |
GSE44635 |
High-throughput RNA sequencing analysis of WT, rdm16-2 and sta1 mutants |
GSE45213 |
Genome-wide analysis of SPL7 regulated genes in Arabidopsis |
GSE45323 |
Genome-wide high-throughput small RNA sequence analysis of B. cinerea-infected Arabidopsis rosette leaves |
GSE45368 |
Polymerase-IV occupancy at RNA-directed DNA methylation sites requires SHH1 |
GSE46226 |
RNA-Seq of single cells from the Arabidopsis root |
GSE46428 |
High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI |
GSE46894 |
Developmental dynamics of DNA accessibility during flower development [DNaseI-Seq] |
GSE46987 |
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development |
GSE47121 |
Improved genome-wide mapping of uncapped and cleaved transcripts in eukaryotes—GMUCT 2.0 |
GSE47453 |
Bisulfite-Seq profiling of wild-type Arabidopsis with two-component transgene silencing (T+S) system |
GSE47490 |
Selection of epigenetic variation in Arabidopsis [SNP data] |
GSE47722 |
Maternal siRNAs mediate spatial and temporal regulation of gene expression and seed development in Arabidopsis |
GSE47852 |
Structural Variant of a Tandem Repeat-containing Silencer Locus Reveals Distinct Pol II and Pol IV-dependent Pathways of siRNA Biogenesis |
GSE48026 |
mRNA-Seq of asi1-1, wild-type and MethlyC-Seq of asi1-1 |
GSE48053 |
MethlyC-Seq of ibm1-4 |
GSE48309 |
Global small RNA analysis in fast-growing Arabidposis thaliana with elevated level of ATP and sugars |
GSE48767 |
Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [RNA-seq] |
GSE48769 |
Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways [ChIP-seq] |
GSE48770 |
Arabidopsis phytochrome A directly targets numerous promoters for individualized modulation of genes in wide range of pathways |
GSE48793 |
APC/CCCS52A2 repressed phytosulfokine signaling restricts root QC cell proliferation through ERF115 degradation |
GSE49090 |
Interplay Between Active Chromatin Marks and RNA-directed DNA Methylation in Arabidopsis thaliana |
GSE49325 |
Characterization of stress-responsive lncRNAs in Arabidopsis thaliana |
GSE49408 |
Alternative splicing fine-tunes transcriptome and translatome in photomorphogenic Arabidopsis [seq] |
GSE49410 |
Alternative splicing fine-tunes transcriptome and translatome in photomorphogenic Arabidopsis |
GSE49421 |
MethylC-Seq of idm2 single mutant and idm1idm2 double mutant |
GSE49935 |
Transcription profiling of wild-type and epic2 mutant plants |
GSE49950 |
Transcriptome profiling of Arabidopsis using strand-specific RNA-seq |
GSE50181 |
Characterization of chromosomal architecture in Arabidopsis thaliana by Chromosome Conformation Capture |
GSE50486 |
rrp6l1-2 project |
GSE50597 |
High-resolution mapping of ribosome footprints from Arabidopsis thaliana |
GSE50691 |
DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [Bisulfite-Seq] |
GSE50719 |
DNA Topoisomerase 1a Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis [RNA-Seq] |
GSE50720 |
DNA Topoisomerase 1α Promotes RNA-directed DNA Methylation and Histone Lysine 9 Dimethylation at Transposable Elements in Arabidopsis |
GSE50942 |
The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis |
GSE50956 |
Next-generation sequencing analyses of the differently expressed genes of wild type and atcep1 mutant Arabidopsis thaliana |
GSE51069 |
The 3′-tag digital gene expression library construction and Illumina sequencing analysis of Wild Type and SPL-/- ovules with placenta Transcriptomes |
GSE51119 |
A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal [RNA-seq] |
GSE51121 |
A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal |
GSE51304 |
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis |
GSE51762 |
Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [BS-Seq] |
GSE51763 |
Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [RNA-Seq] |
GSE51764 |
Arabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Pattern |
GSE51770 |
Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [ChIP-Seq] |
GSE51772 |
Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis [RNA-Seq] |
GSE51773 |
Interactions of ARF6 with PIF4, BZR1, and RGA integrate auxin signaling with environmental and other hormonal signals in Arabidopsis |
GSE51879 |
Transcriptomic analysis of WT and larp1 mutant 21 days old seedling at 20°C or following a heat stress (15 min at 38°C) |
GSE52041 |
SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation |
GSE52175 |
Genomewide identification of LHY binding targets. |
GSE52342 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis [PARE-seq] |
GSE52400 |
BABY BOOM (BBM) ChIP-seq in Arabidopsis somatic embryo tissue |
GSE52407 |
Analysis of the RDR6-dependent ein5 ski2 transcriptome profile in Arabidopsis |
GSE52408 |
Analysis of the RDR6-dependent small RNA profile in ein5 ski2 in Arabidopsis |
GSE52409 |
Analysis of the RDR6-dependent ein5 ski2 profile in Arabidopsis |
GSE52805 |
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: BS-seq of Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm |
GSE52806 |
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: allele specific mRNA-seq expression profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid embryo and endosperm |
GSE52807 |
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting: small RNA-seq profiling in Arabidopsis thaliana Col, Ler, and Cvi parental and reciprocal F1 hybrid seeds |
GSE52814 |
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting |
GSE52951 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis (small RNA-seq) |
GSE52952 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis |
GSE52966 |
Spatiotemporal brassinosteroid signaling and antagonism with auxin control Arabidopsis root growth. |
GSE52983 |
MethylC-Seq of Ws background wild-type (WT), ape1l-1 (Ws background), arp-1 (Col-0 background) and zdp-1 (Col-0 background) mutants |
GSE53033 |
MethlyC-Seq of Col-0 background wild-type (WT) |
GSE53322 |
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana |
GSE53323 |
Mapping and dynamics of regulatory DNA in A. thaliana accessions |
GSE53324 |
Mapping and dynamics of regulatory DNA in A. thaliana tissues and cell types across developmental transitions |
GSE53484 |
Small RNA profiling in an Arabidopsis transgenic line overexpressing AtmiR472 |
GSE53642 |
DNA hypomethylation bypasses the interploidy hybridization barrier in Arabidopsis |
GSE53673 |
CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part |
GSE53950 |
TOP1α functions on nucleosome density |
GSE53952 |
RNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids |
GSE54292 |
DNA methylation variation in Arabidopsis has a genetic basis and appears to be involved in local adaptation |
GSE54677 |
Transcriptional gene silencing by Arabidopsis Microrchidia homologues involves the formation of heteromers |
GSE54944 |
Molecular mechanism of action of plant DRM de novo DNA methyltransferases |
GSE55151 |
Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from massive sequencing of small RNAs and cleaved target RNAs |
GSE55632 |
SKIP Confers Salt Tolerance through Controlling Gene Alternative Splicing in Arabidopsis |
GSE55866 |
Transcriptome profiling of siliques at 4 developmental stages in Arabidopsis |
GSE55884 |
Transcriptome profiling of Arabidopsis smg7 mutant in immune signaling blocked background |
GSE55960 |
Chromosomal Architecture of Arabidopsis and its Implication in Transposon Intergration |
GSE56117 |
Transcriptome Analysis of Arabidopsis thaliana and Changes of Glucosinolates Metabolism Pathway Induced by Flg22 |
GSE56326 |
RNAseq analysis of NGATHA loss and gain of function alleles |
GSE56388 |
MethylC-Seq of ago6-2, ago4-6 and ago4-6 ago6-2 double mutants |
GSE56675 |
Perturbation of parent-specific gene expression during interspecific hybridization |
GSE56811 |
Characterization of miP1a/b (microProteins) overexpression plants, including a constans mutant (co-SAIL) |
GSE56922 |
Global variation of gene expression induced by constitutive activation of the NIK receptor in Arabidopsis |
GSE57191 |
Small RNA accumulation in Transposable Element-silent and Transposable Element-active epigenomes |
GSE57215 |
Detection of Pol IV-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis |
GSE57487 |
The arf10/16 double mutant has a differential transcriptional program in response to Al stress |
GSE57497 |
Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells [ChIP-Seq] |
GSE57579 |
RNA-seq analysis of alternative splicing events in duplicated genes of Arabidopsis thaliana indicates considerable qualitative and quantitative divergence |
GSE57690 |
Genome-wide analysis of PAPS1-dependent polyadenylation identifies novel roles for functionally specialized poly(A) polymerases in Arabidopsis thaliana |
GSE57755 |
Methylation Changes in Arabidopsis Mature Green Seed Parts |
GSE57790 |
Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana |
GSE57791 |
Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination |
GSE57806 |
RNA Sequencing analysis of Wild Type and HID1 mutant Transcriptomes |
GSE57953 |
Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells [RNA-seq] |
GSE57954 |
Direct roles of SPEECHLESS in the specification of stomatal self-renewing cells |
GSE57963 |
Mechanism of DNA methylation-directed histone methylation by KRYPTONITE |
GSE58029 |
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation independent manner [RNA-Seq] |
GSE58082 |
The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [RNA-Seq] |
GSE58083 |
The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light [ChIP-seq] |
GSE58084 |
The photoreceptor chaperone FHY1 has an independent role in gene modulation and plant development under far-red light |
GSE58138 |
ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis |
GSE58787 |
MethlyC-Seq of wild type (with 35S-SUC2 transgene) and idm3-1, mbd7-1 mutants (same 35S-SUC2 background) |
GSE58856 |
A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage |
GSE58857 |
A transcriptional map following the developmental trajectory of the Arabidopsis stomatal lineage |
GSE58974 |
Global analysis of the RNA-protein interaction and RNA secondary structure landscapes of the Arabidopsis nucleus |
GSE59154 |
Profiling of mRNA N6-Adenosine Methylation (m6A) in Arabidopsis |
GSE59167 |
The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis |
GSE59187 |
RGA binding sites in Arabidopsis thaliana seedlings |
GSE59637 |
SEEDSTICK Is a Master Regulator of Development and Metabolism in Arabidopsis Seed Coat |
GSE59639 |
The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (smallRNA-seq) |
GSE59658 |
The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status |
GSE59959 |
The SUVR2 associated proteins FRINGE1 and 2 are required for RdDM in Arabidopsis [Bisulfite-seq] |
GSE60011 |
Genome-wide sequences bound by the transcription factors BLUEJAY and JACKDAW in Arabidopsis thaliana roots |
GSE60084 |
FYRN and FYRC domains of the histone demethylase, JMJ14, mediated chromatin binding and transgene silencing through a pair of NAC transcription factors |
GSE60826 |
Synergistic and independent actions of multiple terminal nucleotidyl transferases in 3’ tailing of small RNAs in Arabidopsis |
GSE60865 |
Ultra-fast transcriptional responses in plants |
GSE60929 |
Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis |
GSE61061 |
Dormancy of green-cotyledon Col seeds matured at 20°C vs 15°C |
GSE61192 |
The catalytically inactive Domains Rearranged Methyltransferase3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis |
GSE61291 |
Identification of MOL1-dependent genes |
GSE61293 |
Characterization of MOL1 function by transcriptional profiling of Arabidopsis inflorescence stems |
GSE61362 |
Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis |
GSE61418 |
Gene expression profiling study by RNA-seq in Arabidopsis thaliana infected by Vibrio vulnificus |
GSE61545 |
Identification of CLF-regulated transcripts using strand-specific RNA-sequencing in Arabidopsis |
GSE61812 |
Transcriptome profiling of DCP5 using strand-specific RNA-sequencing in Arabidopsis |
GSE62206 |
Whole genome methylation maps of Wild Type (WT), mutant (ddm1) and epiRILs |
GSE62256 |
Enhanced Salicylic Acid Biosynthesis Is Involved in Heterosis for Bacterial Defense in Arabidopsis |
GSE62401 |
Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana |
GSE62602 |
Unveil coffee molecular response mechanisms to drought through the expression of the homeobox-leucine zipper I CAHB12 |
GSE62611 |
Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5 |
GSE62799 |
The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis [mRNA-Seq] |
GSE62800 |
The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis [small RNA-Seq] |
GSE62801 |
The SNF2 and RING domain proteins FRG1 and 2 are required for RNA-directed DNA methylation in Arabidopsis |
GSE63238 |
An Rtf2 domain-containing protein influences pre-mRNA splicing and is essential for embryonic development in Arabidopsis thaliana |
GSE63462 |
Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor [RNA-Seq] |
GSE63464 |
Evolutionary dynamics of DNA-binding sites and direct target genes of a floral master regulatory transcription factor |
GSE63757 |
The splicing factor PRP31 is involved in transcriptional gene silencing and stress response in Arabidopsis |
GSE63879 |
tRNA-derived small RNAs target transposable element transcripts |
GSE64381 |
RNA-Seq of 40 single cells from the Arabidopsis root FACS sorted GFP positive cells from WOX5:GFP expressing plants |
GSE64389 |
RNA-directed DNA Methylation is associated with gene expression via chromosomal Interactions |
GSE64475 |
Alterations to hormone regulated defense and stress response networks contribute to the greater growth of Arabidopsis F1 hybrids |
GSE64499 |
MethlyC-Seq of nrpd1-3, nrpd1-12, and nrpe1-11 |
GSE64547 |
A mechanistic linkage between low CO2 and evolution of C4 photosynthesis |
GSE64569 |
BS-seq of ros1-3, ros1-4 with wildtype col-0 |
GSE64600 |
SUVH1, a histone methyltransferase, is required for the expression of genes targeted by DNA methylation |
GSE64665 |
Conserved Molecular Program for Root Development in Diverse Plants |
GSE64740 |
Hybrid Mimics and Hybrid Vigor in Arabidopsis (F4 data) |
GSE64742 |
Hybrid Mimics and Hybrid Vigor in Arabidopsis (F6 data) |
GSE64743 |
Hybrid Mimics and Hybrid Vigor in Arabidopsis |
GSE64759 |
MethlyC-Seq of met18 mutant |
GSE64911 |
Roles and Programming of Arabidopsis ARGONAUTE Proteins During Turnip Mosaic Virus Infection |
GSE65056 |
In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs |
GSE65329 |
REF6 recognizes specific DNA sequence to regulate H3K27me3 demethylation and organ boundary formation |
GSE65685 |
Population epigenomics of Swedish Arabidopsis |
GSE65717 |
Alternative RNA processing events in a double NSR mutant Arabidopsis |
GSE65739 |
Coevolution of hormone metabolism and signaling networks expands plant adaptive plasticity |
GSE66017 |
Effect of Chromomethylase-2 and Dicer-like-3 knockouts on DNA methylation |
GSE66224 |
Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans |
GSE66585 |
Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm |
GSE66599 |
Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses |
GSE66666 |
Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions |
GSE67216 |
Redundant AGO-hook platforms and AGO4-DNA interaction in polV-directed RdDM |
GSE67322 |
Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements |
GSE67613 |
Secondary siRNAs from Medicago NB-LRRs modulated via miRNA-target interactions and their abundances |
GSE67669 |
The cytosolic iron-sulfur cluster assembly protein MMS19 regulates transcriptional gene silencing, DNA repair, and flowering time in Arabidopsis |
GSE67776 |
A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [ChIP-seq] |
GSE67777 |
A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [RNA-seq] |
GSE67778 |
A Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence |
GSE67813 |
XCT is a novel regulator of chromatin functionally conserved across eukaryotes |
GSE68130 |
The effect of expression of the Agrobacterium tumefaciens virulence protein VirE3 on gene expression in Arabidopsis thaliana. |
GSE68131 |
Methylation Profile of postmature-green-stage seed and dry seed from Arabidopsis ddcc mutant |
GSE68132 |
Methylation Changes in Arabidopsis seed development |
GSE68210 |
Differential gene expression analysis of Wildtype and pgp1 mutant at 16°C Long day condition |
GSE68866 |
The Roles of Arabidopsis CDF2 in Transcriptional and Posttranscriptional Regulation of Primary MicroRNAs |
GSE69167 |
Transcriptome profiles and comparison of Arabidopsis thaliana woody (soc1-ful) and WT (Col-0) stems. |
GSE69281 |
MethlyC-Seq of met18-1(SALK_121963) and met18-2(SALK_147068) mutant |
GSE69422 |
Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (ChIP-Seq) |
GSE69424 |
Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ (RNA-Seq) |
GSE69425 |
Genome-wide identification of FHY3 binding sites in Arabidopsis floral organ |
GSE69426 |
High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns and functions in Arabidopsis and rice |
GSE69510 |
Reducing Cytoplasmic Polyamine Oxidase Activity in Arabidopsis Increases Salt and Drought Tolerance by Reducing Reactive Oxygen Species Production and Increasing Defense Gene Expression. |
GSE69802 |
Insights into the adaptive stress response of Arabidopsis thaliana to thermal stress by ribosomal profiling |
GSE69904 |
Arginine methylation regulates widespread alternative polyadenylation |
GSE70100 |
Identification of mRNAs Regulated in Response to Transcriptional Activation of the Arabidopsis ABA INSENSITIVE GROWTH 1 (ABIG1) Transcription Factor cDNA |
GSE70455 |
Dynamic of DNA methylation during Arabidopsis reproduction |
GSE70491 |
The LSM1-7 Complex Differentially Regulates Arabidopsis Tolerance to Abiotic Stress Conditions by Promoting Selective mRNA Decapping |
GSE70575 |
Photomorphogenesis of Arabidopsis seedlings is accompanied by complex alternative splicing alterations |
GSE70584 |
MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root |
GSE70796 |
Transcription targets of ASYMMETRIC LEAVES 2 (AS2), KANADI1 (KAN), REVOLUTA (REV) and SHOOT MERISTEMLESS (STM) genes |
GSE70912 |
Dicer-independent RNA-directed DNA methylation in Arabidopsis [methylC-seq] |
GSE70913 |
Dicer-independent RNA-directed DNA methylation in Arabidopsis [small RNA-seq 1] |
GSE71451 |
Identification of MOL1-dependent genes II |
GSE71517 |
Identification of SMXL4- and SMXL5-dependent genes in comparison to the SMAX1-dependent genes |
GSE71563 |
Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica |
GSE71564 |
Genome-wide dynamics of H3K27me3 and H3K4me3 during early flower development [ChIP-seq] |
GSE71581 |
Expression profiling during early flower development [RNA-seq] |
GSE71583 |
Early flower development |
GSE71672 |
Dicer-independent RNA-directed DNA methylation in Arabidopsis [small RNA-seq 2] |
GSE71803 |
Genome-wide mapping of uncapped and cleaved transcripts (GMUCT) and transcriptome of DCLs |
GSE71913 |
Genome-wide mapping of uncapped and cleaved transcripts reveals a role for the nuclear messenger RNA cap-binding complex in plant co-translational RNA decay |
GSE72280 |
MethlyC-Seq of Col-0 (wild type, WT), nrpd1-3, nrpe1-11, ros1-4 single mutants and ros1-4nrpd1-3 double mutant |
GSE72456 |
Impact of URT1-mediated uridylation on small RNA tailing in Arabidopsis |
GSE72458 |
Impact of URT1-mediated uridylation on small RNA tailing in Arabidopsis and global view of mRNA uridylation in Arabidopsis |
GSE72505 |
The identificantion of novel miRNA targets in Arabidopsis thaliana shoots using genome-wide mapping of uncapped and cleaved transcripts (GMUCT) 2.0 |
GSE72706 |
Transcriptome-wide high-throughput deep m6A-seq reveals unique m6A methylation differential patterns among three organs in Arabidopsis |
GSE72735 |
Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [ChIP-Seq] |
GSE72736 |
Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis |
GSE72770 |
Whole Genome Bisulfite sequencing of Arabidopsis thaliana High and Low phosphate methylomes |
GSE72806 |
ABA is required for plant acclimation to a combination of salt and heat stress |
GSE72982 |
Identification of small RNA loci that are synthesized by RNA-dependent RNA polymerases1/2/6 |
GSE72993 |
Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation |
GSE73752 |
Small RNA deep sequencing of Arabidopsis DRB mutants |
GSE74398 |
A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis |
GSE74488 |
RNA-Seq of single cells from regenerating Arabidopsis root |
GSE74551 |
The chromatin remodeler protein DDM1 regulates early seedling growth hybrid vigor by modulating gene expression in Arabidopsis |
GSE74584 |
Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis I |
GSE74585 |
Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis II |
GSE74587 |
Auxin-independent NAC pathway regulates cell wall metabolism in response to explant-specific wounding during regeneration in Arabidopsis |
GSE74717 |
RNAseq of Arabidopsis thaliana Col-0 inflorescences |
GSE74721 |
Deciphering the cell-specific role of Arabidopsis Argonaute 3 [RNA-seq] |
GSE74722 |
Deciphering the cell-specific role of Arabidopsis Argonaute 3 [smallRNA-Seq] |
GSE74723 |
Deciphering the cell-specific role of Arabidopsis Argonaute 3 |
GSE74841 |
H3K36ac is an evolutionary conserved histone modification that marks active genes in plants |
GSE74897 |
Transcriptomic analysis of atphb3 mutant. |
GSE75071 |
On the Origin and Evolutionary Consequences of Gene Body DNA Methylation |
GSE75199 |
Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor, MONGOOSE1 |
GSE75377 |
Antagonistic Regulation of Abscisic Acid Inhibited Root Growth By Brassinosteroid is Partially Mediated by BRASSINAZOLE RESISTENT 1 suppressed ABSCISIC ACID INSENSITIVE 5 expression |
GSE75640 |
Translatome analysis of NB-LRR immune response identifies important contributors to plant immunity in Arabidopsis. |
GSE76382 |
Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT) |
GSE76406 |
GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize |
GSE76447 |
Transcriptome profiling of post-mature green seeds from Arabidopsis ddcc mutant and wild-type |
GSE76577 |
Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana |
GSE77394 |
EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response [ChIP-seq] |
GSE77395 |
EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response [RNA-seq] |
GSE77396 |
EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response |
GSE77428 |
mRNA sequencing of Arabidopsis thaliana pdx3 mutants |
GSE77486 |
The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence |
GSE77735 |
Identification of Multiple Proteins Coupling Transcriptional Regulation to Genome Stability in Arabidopsis thaliana |
GSE77966 |
MTHFD1 controls DNA methylation in Arabidopsis |
GSE78088 |
Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [miRNA-seq] |
GSE78090 |
Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing |
GSE78836 |
Arabidopsis AtMORC4 and AtMORC7 form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes |
GSE78846 |
Whole genome bisulfite sequencing of hdp1-1 and hdp2-1 mutants (both with 35S-SUC2 transgene) |
GSE78969 |
Lincomycin effect on PIFq-regulated transcriptome |
GSE79012 |
Gene expression profiling shows that combination of jazQ and phyB-9 mutations promotes additive and enhanced expression of growth- and defense-related genes |
GSE79259 |
The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation |
GSE79353 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I] |
GSE79354 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq] |
GSE79355 |
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana |
GSE79412 |
FPS down-regulation alters chloroplast development and triggers an sterol-dependent induction of JA-related and Fe deficiency transcriptional responses |
GSE79524 |
Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis |
GSE79576 |
Arabidopsis SAURs Are Critical for Differential Light Regulation of the Development of Various Organs |
GSE79676 |
Bisulfite-Seq and RNA-seq profiling of Arabidopsis aneuploids |
GSE79708 |
Unique cell-type specific patterns of DNA methylation in the root meristem (MethylC-seq) |
GSE79709 |
Unique cell-type specific patterns of DNA methylation in the root meristem (RNA-seq) |
GSE79710 |
Unique cell-type specific patterns of DNA methylation in the root meristem |
GSE79738 |
Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis |
GSE79780 |
Comparing the targets of distinct RNA Directed DNA Methylation mechanisms in Arabidopsis thaliana |
GSE80050 |
Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana |
GSE80051 |
Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana |
GSE80052 |
Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana |
GSE80053 |
Gene expression analysis (RNA-seq) of Arabidopsis thaliana roots in wild type and trm4b-1 mutants under control and oxidative stress conditions |
GSE80054 |
Transcriptome-wide RNA 5-methylcytosine methylation in siliques, shoots and roots and root gene expression profiling of Arabidopsis thaliana |
GSE80056 |
POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis |
GSE80068 |
The SET Domain Proteins SUVH2 and SUVH9 Are Required for Pol V Occupancy at RNA-Directed DNA Methylation Loci |
GSE80188 |
Analysis of gene expression patterns of Arabidopsis roots grown in methyl jasmonate (MeJA), cytokinin (CK), MeJA/CK- treated conditions |
GSE80301 |
The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing [RNA-seq] |
GSE80302 |
The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing [Bisulfite-seq] |
GSE80303 |
The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing |
GSE80370 |
Two components of the RNA-directed DNA methylation pathway associate with MORC6 and silence loci targeted by MORC6 in Arabidopsis |
GSE80448 |
Study of expression changes during RPS4-mediated resistance in Arabidopsis using a temperature-inducible system which mirrors NLR activation II |
GSE80712 |
Identification of microRNA targets in Arabidopsis by transcriptome profiling of wild-type and ago1-36 mutant plants |
GSE81166 |
Arabidopsis thaliana treatments to trigger somatic embryo formation under RNAseq |
GSE81200 |
ENAP1 is involoved in the Histone H3K23 acetylation- and EIN3- mediated ethylene response |
GSE81295 |
Buffer composition affects ribosome footprint precision in Arabidopsis root and shoot |
GSE81366 |
Proteome-wide identification of protein poly(ADP-ribosyl)ation targets reveals an important role of FHA domain protein DAWDLE in Arabidopsis immunity |
GSE81407 |
Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals |
GSE81618 |
Transcriptom analyses of Arabidopsis altered meritem program1-32 (amp1-32) mutant as well as wild-type Columbia-0 plants via next-generation sequencing (NGS). |
GSE82041 |
Endoplasmic reticulum as a hub organizing the activities of microRNAs and a subset of endogenous siRNAs in Arabidopsis |
GSE82086 |
Alteration In Auxin Homeostasis By Overexpression Of PINOID Kinase Causes Leaf Growth Defects In Arabidopsis thaliana |
GSE83214 |
Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling |
GSE83355 |
The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status |
GSE83361 |
The coi1-2 mutant has a differential transcriptional program in response to Al stress |
GSE83487 |
Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana [sRNA] |
GSE83488 |
Alternaria brassicicola infection regulates miRNAs in Arabidopsis thaliana |
GSE83557 |
The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status (mRNA-seq) |
GSE83568 |
The Arabidopsis Polycomb Repressive Complex 1 (PRC1) components AtBMI1A, B and C impact gene networks throughout all stages of plant development |
GSE83607 |
Loss of the DNA methyltransferase MET1 induces H3K9 hypermethylation at PcG target genes in Arabidopsis, and relocation of H3K27 trimethylation to transposons [RNA-seq] |
GSE83646 |
Unraveling multifaceted contributions of small regulatory RNAs to the photomorphogenic development in Arabidopsis |
GSE83802 |
The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications |
GSE84014 |
Mutation of S-adenosyl-methionine synthetase 3 (SAMS3) releases transcriptional silencing by reducing DNA and histone methylation in Arabidopsis |
GSE84753 |
Transcriptomic analysis of regulatory gene expression profiles by NF-YCs, and RGL2 under paclobutrazol (PAC) condition |
GSE85067 |
Comparative transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana |
GSE85069 |
Comparative sRNA-Seq analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana |
GSE85070 |
Comparative mRNA and sRNA transcriptome analysis of TCV-infected wildtype and dcl1-9 mutant Arabidopsis thaliana |
GSE85292 |
The luh-4 mutant has a differential transcriptional program in response to Al stress |
GSE85516 |
Diversification of Root Hair Development Genes in Vascular Plants |
GSE85651 |
Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [ChIP-seq] |
GSE85653 |
Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [RNA-seq] |
GSE85655 |
Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions |
GSE85847 |
Expression data of agl62/- and wild-type seeds at 30 hrs after pollination |
GSE85848 |
Auxin production in the endosperm drives seed coat development in Arabidopsis |
GSE85975 |
DNA methylation dynamics during early plant life |
GSE86395 |
A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (CPDs) |
GSE86401 |
A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions (smallRNAs) |
GSE86403 |
A genome-wide study reveals a pathway for small RNA-mediated recognition of UV-induced DNA lesions |
GSE86447 |
RTEL1 modulates H3 occupancy in heterochromatic regions and acts synergistically with MET1/DDM1 to maintain genome integrity |
GSE86459 |
A global view of RNA-protein interactions reveals novel root hair cell fate regulators |
GSE86498 |
H3K23me1 is an evolutionary conserved histone modification associated with CG DNA methylation in Arabidopsis |
GSE86581 |
Revealing global translational reprogramming as a fundamental layer of immune regulation in plants |
GSE86583 |
Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis |
GSE86787 |
Exogenous Transposable Elements Circumvent Homology Permitting the Dissection of Expression Dependent Silencing |
GSE87170 |
DNA methylation inheritance across generations |
GSE87329 |
Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered CO2 availability |
GSE87352 |
Transcriptomic profilling of Arabidopsis thaliana roots infected by Fusarium oxysporum |
GSE87415 |
Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis |
GSE87421 |
Arabidopsis thaliana sixth generation of mutant fas2 MNase-seq |
GSE87851 |
Differential gene expression analysis of Wildtype and NMD deficient mutants grown at 23°C Long day condition |
GSE87880 |
Transcriptomic analysis of Col and ein3eil1 under Cd stress. |
GSE88790 |
N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana. |
GSE89356 |
H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity [RNA-seq] |
GSE89357 |
H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity [ChIP-seq] |
GSE89358 |
H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity |
GSE89617 |
RNA-seq of Arabidopsis thaliana Col-0 siliques |
GSE89850 |
Next Generation Sequencing Facilitates Quantitative Analysis of nf-ycQ in Arabidopsis thaliana seedlings Transcriptomes |
GSE89889 |
Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species. |
GSE89894 |
Gene expression profiling study by RNA-seq in Arabidopsis thaliana treated with Chlorella |
GSE90159 |
Analysis of gene expression patterns of arabidopsis whitening mutant wn1 and wild-type |
GSE90167 |
Transcriptome analysis after IAA paste application on pin1 mutant inflorescence meristems |
GSE90169 |
Transcriptomic analysis of dorso-ventral cell-types of Arabidopsis shoot apical meristem |
GSE90170 |
Transcriptome analysis after knocking down class III HD ZIP transcription factors in SAM |
GSE90507 |
Transcriptome analysis after ectopically expressing KAN1 in SAM epidermis |
GSE90549 |
Transcriptome analysis after ectopically expressing REV in SAM epidermis |
GSE91013 |
Small RNAs in stv-1 mutant |
GSE92449 |
Histone lysine-to-methionine mutation reprograms the histone methylation landscape and contributes to pleiotropic development in Arabidopsis |
GSE92568 |
Genetic influences on gene expression in Arabidopsis thaliana |
GSE92611 |
Induced one gene overexpression and check the transcriptional expression |
GSE92922 |
Endoplasmic reticulum as a hub organizing microRNAs and a subset of endogenous siRNAs in Arabidopsis [Ribo-Seq and RNA-Seq] |
GSE93223 |
Plant-specific histone residue F41 restricts H3.1 distribution in heterochromatin |
GSE93420 |
Dehydration and Fixed-Carbon Starvation of Brassinosteroid related mutants in Arabidopsis |
GSE93875 |
An integrative analysis of different histone acetylation in ethylene response in Arabidopsis |
GSE93968 |
Proximal methylation features associated with nonrandom changes in gene body methylation |
GSE93979 |
The Arabidopsis Cys2/His2 zinc-finger transcription factor ZAT18 is a positive regulator of plant tolerance to drought stress |
GSE94107 |
An RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
GSE94547 |
The PIF4 controlled auxin pathway contributes to hybrid vigor in Arabidopsis thaliana |
GSE94576 |
Next Generation RNA Sequencing reveals defects in nuclear and chloroplast mRNA maturation of Arabidopsis thaliana lefko2 mutant |
GSE94607 |
Arabidopsis CLE peptide hormones contribute to pollen development through precisely regulated transcriptomic and proteomic networks |
GSE94720 |
Boundary Formation is an Inherent Property of Mobile Small RNA Gradients |
GSE94786 |
A small RNA pathway mediates allelic dosage in endosperm [mRNA-seq] |
GSE94787 |
A small RNA pathway mediates allelic dosage in endosperm [sRNA-seq] |
GSE94792 |
A small RNA pathway mediates allelic dosage in endosperm |
GSE95175 |
The histone H3 variant H3.3 regulates gene body DNA methylation [BiSulfite-seq] |
GSE95301 |
Chromatin-Bound ARGONAUTE 1 Promotes Gene Transcription in Response to Various Stimuli in Arabidopsis |
GSE95473 |
Defective XRN3-mediated transcription termination in Arabidopsis affects the expression of protein-coding genes [seq] |
GSE95557 |
Compartmentalization of DNA damage response between heterochromatin and euchromatin is mediated by distinct H2A histone variants |
GSE95665 |
Arabidopsis ZED1-related kinases mediate temperature-sensitive intersection of immune response and growth homeostasis |
GSE95669 |
HOP family plays a major role in long term acquired thermotolerance in Arabidopsis affecting the HSR and protein QC |
GSE95768 |
small RNA sequencing from leaf of Arabidopsis to identify tsRNA |
GSE96666 |
Salicylic acid-dependent and -independent transcriptome changes in response to methyl-erythritol cyclodiphosphate accumulation |
GSE96806 |
Transcription factor Interplay between LEAFY and APETALA1/ CAULIFLOWER during Floral Initiation |
GSE96812 |
A high temperature RNA-seq dataset for studies of gene expression variation in the MAGIC line resource of Arabidopsis thaliana |
GSE96834 |
The histone H3 variant H3.3 regulates gene body DNA methylation [ChIP-seq] |
GSE96848 |
Identification of HDA15-PIF1 as a Key Repression Module Directing the Transcriptional Network of Seed Germination in the Dark |
GSE96873 |
The histone H3 variant H3.3 regulates gene body DNA methylation |
GSE97174 |
Identification of Factors Required for m6A mRNA Methylation in Arabidopsis Reveals a Role for the Conserved E3 Ubiquitin Ligase HAKAI |
GSE97231 |
The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana [RNA-Seq] |
GSE97446 |
Auxin responsive genes in the Arabidopsis stem |
GSE97449 |
ARF5/MP responsive genes in the vascular cambium of Arabidopsis |
GSE97500 |
Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply |
GSE97917 |
Small RNA (sRNA) sequencing from A. thaliana flowers |
GSE98045 |
Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana [CPL4(Oto)] |
GSE98047 |
Salt-stress and CTD phosphatase-like 4 mediate switching of snRNA to mRNA transcription in Arabidopsis thaliana |
GSE98141 |
Genome-wide identification and characterization of novel lncRNAs in Arabidopsis thaliana |
GSE98162 |
DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis [DNA methylation] |
GSE98176 |
RNA-Seq of epidermis and mesophyll in arabidopsis developing embryos |
GSE98193 |
Auxin responses in the Arabidopsis stem and cambium |
GSE98283 |
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (Bisulfite-Seq) |
GSE98284 |
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (RNA-Seq) |
GSE98285 |
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci (miRNA-Seq) |
GSE98286 |
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci |
GSE98313 |
Effect of dilution on RNA seq sensitivity |
GSE98389 |
Gene expression profiling of the octuple jazQ mycT mutant shows that the MYC transcription factors control expression of many genes mis-regulated in jazQ, and also identifies some MYC-indepedent expression changes |
GSE98610 |
Ribosome footprints sequencing from Arabidopsis thaliana roots during Pi starvation |
GSE98779 |
LUC7 is an U1snRNP component that plays a role in alternative splicing and terminal introns removal in plants |
GSE98872 |
Comparative Epigenomics Reveals Hierarchical Regulation of Non-CG Methylation in Arabidopsis |
GSE99283 |
high temp wt - High temperature Arabidopsis root transcriptome |
GSE99290 |
Functional analysis of evening complex component LUX in Arabidopsis |
GSE99396 |
Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding [Arabidopsis] |
GSE99464 |
Identification of AtGRP7 targets by RIP-seq |
GSE99576 |
Exploring the link between ER stress and autophagy in Arabidopsis |
GSE99587 |
Identification of LEC1 binding sites in Arabidopsis bent cotyledon stage seeds |
GSE99615 |
Identification of differentially expressed genes by RNA-seq in AtGRP7 overexpression and knockdown lines |
GSE99616 |
Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7 |
GSE99639 |
Mnase-Seq study of Arabidopsis thaliana mutant chr5 |
GSE99854 |
Spatial control of gene expression by miR319-regulated TCP transcription factors in leaf development |
GSE100010 |
RNA-directed DNA methylation involves co-transcriptional small RNA-guided slicing of Pol V transcripts in Arabidopsis |
GSE100450 |
mRNA sequencing of wild type Columbia and serrate-1 globular stage embryos of Arabidopsis thaliana |
GSE100760 |
RNA-Seqs of WT and crwn1 crwn2 double mutant |
GSE100965 |
Genome-wide maps of histone H3 acetylation (H3Ac) in wild type (WT; Columbia-0; Col) and hag1 calli |
GSE100966 |
Global gene-expression profiles of wild type (WT; Columbia-0; Col) and hag1 in the course of de novo shoot regeneration |
GSE100967 |
Acquisition of Pluripotency by HAG1-mediated Epigenetic Reprogramming of Key Potency Factor-encoding Loci in Arabidopsis |
GSE101422 |
Gene expression profile during wound-induced callus formation in Arabidopsis thaliana |
GSE101428 |
A bivalent histone reader is an epigenetic switch regulating floral phase transition |
GSE101483 |
NPR1 REGULATES COLD ACCLIMATION VIA NOVEL INTERACTION WITH HSFA1s TRANSCRIPTION FACTOR FAMILY PROTEINS |
GSE101543 |
Polymerases IV and V affect Pol II transcription termination |
GSE101567 |
Global gene-expression profiles of WT Arabidopsis (Col-0), npr1-1, and hac1/5 treated with water or INA |
GSE101570 |
Genome-wide maps of histone H3 acetylation (H3Ac) in wild type (WT; Col-0), npr1-1, and hac1/5 |
GSE101572 |
HTS-Seq analysis of wild type (WT; Col-0), npr1-1, and hac1/5 |
GSE101782 |
Powerdress Mediated Histone Deacetylation Is Essential For Thermomorphogenesis In Arabidopsis Thaliana |
GSE101952 |
Regulatory DNA in A. thaliana can tolerate high levels of sequence divergence |
GSE102236 |
miRNA mobility is a highly regulated process in plants |
GSE102302 |
A Tripartite Amplification Loop Involving WRKY75, Salicylic Acid and ROS Accelerates Leaf Senescence in Arabidopsis |
GSE102694 |
RNA-seq Analysis of the stem of Wild Type and CEP1 Transcriptomes |
GSE102984 |
ENAP1 is involoved in the EIN3- mediated ethylene response |
GSE102988 |
Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling in ein3eil1 mutant plants |
GSE103054 |
AUXIN RESPONSE FACTOR3 Integrates the Functions of AGAMOUS and Auxin to Repress Cytokinin Biosynthesis and Signaling in Floral Meristem Determinacy |
GSE103112 |
GC-rich coding sequences reduce transposon-like sRNA-mediated transgene silencing in Arabidopsis and maize |
GSE103422 |
Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing [ncRNA-seq] |
GSE103423 |
Arabidopsis MOS4-associated complex promotes microRNA biogenesis and pre-mRNA splicing |
GSE103762 |
The Arabidopsis transcription factor TCP5 during petal and inflorescence development |
GSE103924 |
Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS) |
GSE104115 |
Cell layer specific AGO1-loaded sRNA from Arabidopsis thaliana dcl234 triple mutant |
GSE104117 |
Cell layer specific AGO1-loaded sRNA from dcl234 triple mutant; Cell layer specific and polysome associated RNA from Col0 and hyl1 mutant roots. |
GSE104240 |
Stable transgenerational epigenetic inheritance requires a DNA methylation-sensing circuit |
GSE104456 |
Profiling of cytosine DNA-methylation in the Arabidopsis CAF-1 mutant fas2 |
GSE104483 |
Next Generation Sequencing of Wild Type and AtSRT1 transgene plants Transcriptomes |
GSE104590 |
Verticillium dahliae-Arabidopsis interaction causes changes in gene expression profiles and jasmonate levels on different time scales |
GSE104916 |
Transcriptomic characterization of spl7 and Col-0 ecotypes of Arabidopsis reveals new aspects of Fe-Cu crosstalk |
GSE105000 |
Genome-wide bisulphite sequencing of Arabidopsis thaliana embryo and endosperm |
GSE106223 |
The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5 |
GSE106615 |
Genome-wide transcriptomic analysis of Arabdiopsis mutants controling nuclear size in comparison to the wildtype |
GSE106970 |
The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis [lncRNA-seq] |
GSE106971 |
The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis [small RNA-seq] |
GSE106972 |
The Anaphase Promoting Complex/Cyclosome degrades DMS3 to maintain RNA-directed DNA Methylation in Arabidopsis |
GSE107260 |
INDUCER OF CBF EXPRESSION 1 is a male fertility regulator impacting anther dehydration in Arabidopsis |
GSE107699 |
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis |
GSE107778 |
RNA-Seq Analysis of Genes Differentially Expressed across temporal and spatial deposition of wall ingrowths in Arabidopsis Phloem Parenchyma Transfer Cells |
GSE107883 |
Functional analysis of HD2C in Arabidopsis |
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