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| Status |
Public on Nov 19, 2015 |
| Title |
Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Root-knot nematodes (RKNs) induce inside the vascular cylinder the giant cells (GCs) imbibed into a gall. Gene-repression in early developing GCs could be facilitated by small RNAs (sRNA) as miRNAs. 24nt-sRNAs, rasiRNAs and 21-22nt-sRNAs can also mediate epigenetic mechanisms. Three sRNA libraries from 3dpi galls and three from uninfected root segments were sequenced following Illumina-Solexa technology.
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| Overall design |
Three sRNA libraries from 3dpi galls and three from uninfected root segments were sequenced
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| Contributor(s) |
Escobar C, Cabrera J |
| Citation(s) |
26542733, 34284724 |
| |
| Submission date |
Jul 30, 2015 |
| Last update date |
Jul 28, 2021 |
| Contact name |
Javier Cabrera |
| Organization name |
UCLM
|
| Street address |
Avda. Carlos III s/n
|
| City |
Toledo |
| ZIP/Postal code |
45071 |
| Country |
Spain |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (6)
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| Relations |
| BioProject |
PRJNA291520 |
| SRA |
SRP061843 |
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