|
| Status |
Public on Nov 01, 2016 |
| Title |
The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
27797352 |
| |
| Submission date |
Jun 28, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Jian-Kang Zhu |
| E-mail(s) |
zhu132@purdue.edu
|
| Organization name |
Purdue University
|
| Department |
Department of Horticulture and Landscape Architecture
|
| Street address |
625 Agriculture Mall Dr.
|
| City |
West Lafayette |
| State/province |
IN |
| ZIP/Postal code |
47907 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (16)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE72280 |
MethlyC-Seq of Col-0 (wild type, WT), nrpd1-3, nrpe1-11, ros1-4 single mutants and ros1-4nrpd1-3 double mutant |
| GSE76382 |
Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT) |
| GSE83800 |
small RNA profiling of WT, ros1-4, nrpd1 single mutants and ros1-4/nrpd1doubble mutant [small RNA-seq] |
| GSE83801 |
Whole genome bisulfite sequencing of nrpd1 mutant in C24 background [methyl-seq] |
|
| Relations |
| BioProject |
PRJNA327038 |
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