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Status |
Public on Jun 17, 2012 |
Title |
Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT |
Organism |
Arabidopsis thaliana |
Experiment type |
Methylation profiling by high throughput sequencing
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Summary |
Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in ros1, idm1, and rdd mutants and identify hypermethylated regions comparing to wild type Arabidopsis plants.
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Overall design |
Examination of 3 different mutants' methylome. 8 samples (3 mutants, 1 WT, each has two biological replicates)
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Contributor(s) |
Qian W, Miki D, Tang K, Liu R, Zhu J |
Citation(s) |
22700931, 25933434 |
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Submission date |
Oct 19, 2011 |
Last update date |
Jan 13, 2020 |
Contact name |
Jian-Kang Zhu |
E-mail(s) |
zhu132@purdue.edu
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Organization name |
Purdue University
|
Department |
Department of Horticulture and Landscape Architecture
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Street address |
625 Agriculture Mall Dr.
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City |
West Lafayette |
State/province |
IN |
ZIP/Postal code |
47907 |
Country |
USA |
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Platforms (2) |
GPL11221 |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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Samples (8)
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Relations |
SRA |
SRP008994 |
BioProject |
PRJNA149493 |