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Items: 1 to 20 of 111062

1.

The genes expression in WT and XBAT31 mutant under normal and high temperature at reproductive stage of Arabidopsis.

(Submitter supplied) To investigate the genes which relay on XBAT31 under high temperature and are induced by high temperature.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26208
12 Samples
Download data: TXT
Series
Accession:
GSE228349
ID:
200228349

2.

Multi-omics profiling of 5 Arabidopsis accessions in response to combined water and nitrogen deficiencies

(Submitter supplied) In this study, we build an in-depth multi-omics profile of 5 Arabidopsis accessions, in order to find the inner relations of N deficit, mild drought, and combined stress response at the physiological, metabolic and transcriptional level.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19580
119 Samples
Download data: TSV
Series
Accession:
GSE206890
ID:
200206890

3.

The ATHB2 microProtein affects plant development and the shade avoidance response [Iso-seq]

(Submitter supplied) Plants display remarkable adaptability to varying light conditions, crucial for their optimal growth and development. Here, we investigate the functional significance of ATHB2-miP, a microProtein arising from an alternative transcript of the ATHB2 gene, in both white light and shade environments, supported by comprehensive phenotyping experiments. ATHB2, a homeodomain-leucine zipper transcription factor, is known for its involvement in growth regulation. more...
Organism:
Arabidopsis thaliana
Type:
Other
Platform:
GPL20197
3 Samples
Download data: FASTA
Series
Accession:
GSE267983
ID:
200267983

4.

Terminal nucleotidyl transferases govern secondary siRNA production at distinct steps in plants

(Submitter supplied) In this study, we aim at understanding the contributions from TUTases, HESO1 and URT1, in miRNA-targeted secondary siRNA production in Arabidopsis thaliana. We have sequenced small RNAs from various T-DNA insertation single/double/triple mutants and compared their capability of producing ectopic secondary siRNAs from endogenous miRNA targets. The DESeq analysis is also included.
Organism:
Arabidopsis thaliana
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19580
24 Samples
Download data: FASTQ, XLSX
Series
Accession:
GSE267947
ID:
200267947

5.

Arabidopsis Lon1 disruption decreases autophagy flux affects seed development through brassinosteroid regulation

(Submitter supplied) Arabidopsis Lon1 serves dual roles as a mitochondrial protease and chaperone. Loss of Lon1 function reduced autophagy flux at transcriptional, protein and cellular levels. Meanwhile, changes occurred in the levels of cellular subunit proteins, especially a significant upregulation of mitochondrial proteins overall in lon1 mutants. Lon1 is a key enzyme in maintaining mitochondrial protein homeostasis. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL31102
6 Samples
Download data: TXT
Series
Accession:
GSE262650
ID:
200262650

6.

The ATHB2 microProtein affects plant development and the shade avoidance response

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL17639 GPL21785 GPL20197
33 Samples
Download data: FASTA
Series
Accession:
GSE241976
ID:
200241976

7.

The ATHB2 microProtein affects plant development and the shade avoidance response (PEAT)

(Submitter supplied) Plants display remarkable adaptability to varying light conditions, crucial for their optimal growth and development. Here, we investigate the functional significance of ATHB2-miP, a microProtein arising from an alternative transcript of the ATHB2 gene, in both white light and shade environments, supported by comprehensive phenotyping experiments. ATHB2, a homeodomain-leucine zipper transcription factor, is known for its involvement in growth regulation. more...
Organism:
Arabidopsis thaliana
Type:
Other
Platform:
GPL17639
3 Samples
Download data: TXT
Series
Accession:
GSE241975
ID:
200241975

8.

The ATHB2 microProtein affects plant development and the shade avoidance response (RNA-Seq)

(Submitter supplied) Plants display remarkable adaptability to varying light conditions, crucial for their optimal growth and development. Here, we investigate the functional significance of ATHB2-miP, a microProtein arising from an alternative transcript of the ATHB2 gene, in both white light and shade environments, supported by comprehensive phenotyping experiments. ATHB2, a homeodomain-leucine zipper transcription factor, is known for its involvement in growth regulation. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21785
27 Samples
Download data: TXT
Series
Accession:
GSE241974
ID:
200241974

9.

Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL26208
24 Samples
Download data: BW, TXT
Series
Accession:
GSE263313
ID:
200263313

10.

Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development (ChIP-Seq)

(Submitter supplied) To investigate the functional conservation of H2A.Z histones during eukaryotic evolution we transformed h2a.z deficient plants with three human H2A.Z proteins to assess their ability to rescue the mutant defects. We discovered that human H2A.Z.1 and H2A.Z.2.1 fully complement the phenotypic abnormalities of h2a.z plants even though Arabidopsis and human H2A.Z N-terminal tail sequences are divergent, while the brain-specific splice variant H2A.Z.2.2 has a dominant-negative effect in wild-type plants. more...
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL26208
9 Samples
Download data: BW, TXT
Series
Accession:
GSE263312
ID:
200263312

11.

Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development (WT, h2a.z + HsH2A.Z. RNA-Seq)

(Submitter supplied) To investigate the functional conservation of H2A.Z histones during eukaryotic evolution we transformed h2a.z deficient plants with three human H2A.Z proteins to assess their ability to rescue the mutant defects. We discovered that human H2A.Z.1 and H2A.Z.2.1 fully complement the phenotypic abnormalities of h2a.z plants even though Arabidopsis and human H2A.Z N-terminal tail sequences are divergent, while the brain-specific splice variant H2A.Z.2.2 has a dominant-negative effect in wild-type plants. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26208
6 Samples
Download data: TXT
Series
Accession:
GSE263311
ID:
200263311

12.

Replacement of Arabidopsis H2A.Z with human H2A.Z orthologs reveals extensive functional conservation and limited importance of the N-terminal tail sequence for Arabidopsis development (WT, h2a.z, h2a.z + AtHTA11 RNA-Seq)

(Submitter supplied) To investigate the functional conservation of H2A.Z histones during eukaryotic evolution we transformed h2a.z deficient plants with three human H2A.Z proteins to assess their ability to rescue the mutant defects. We discovered that human H2A.Z.1 and H2A.Z.2.1 fully complement the phenotypic abnormalities of h2a.z plants even though Arabidopsis and human H2A.Z N-terminal tail sequences are divergent, while the brain-specific splice variant H2A.Z.2.2 has a dominant-negative effect in wild-type plants. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26208
9 Samples
Download data: TXT
Series
Accession:
GSE263310
ID:
200263310

13.

Dynamic evolution of the heterochromatin sensing histone demethylase IBM1

(Submitter supplied) Heterochromatin constitutes a fundamental aspect of genomes that is crucial for maintaining genome stability. In flowering plants, maintenance of heterochromatin relies on a positive feedback loop involving the histone 3 lysine nine methyltransferase (H3K9), KRYPTONITE (KYP), and the DNA methyltransferase, CHROMOMETHYLASE3 (CMT3). An H3K9 demethylase, INCREASED IN BONSAI METHYLATION 1 (IBM1), has evolved to modulate the activity of KYP-CMT3 within transcribed genes. more...
Organism:
Raphanus raphanistrum; Isatis lusitanica; Arabidopsis thaliana
Type:
Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platforms:
GPL34074 GPL26208 GPL34073
12 Samples
Download data: TSV
Series
Accession:
GSE252913
ID:
200252913

14.

Rapid systemic responses of Arabidopsis to waterlogging stress are mediated by the ROS wave

(Submitter supplied) We show that an abrupt waterlogging treatment of Arabidopsis thaliana plants triggers a systemic ROS and calcium wave response, and that the waterlogging-triggered ROS wave response is dependent on RBOHD, calcium-permeable channels GLR3.3 and GLR3.6, and aquaporin PIP2;1 proteins. We further show that waterlogging stress is accompanied by a rapid systemic transcriptomic response that is evident as early as 10 min following waterlogging initiation and is partially dependent on RBOHD. more...
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26208
30 Samples
Download data: CSV
Series
Accession:
GSE225407
ID:
200225407

15.

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIRP-seq]

(Submitter supplied) Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.
Organism:
Arabidopsis thaliana
Type:
Other
Platform:
GPL17639
6 Samples
Download data: BED, BW
Series
Accession:
GSE195747
ID:
200195747

16.

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [ChIP-seq]

(Submitter supplied) Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.
Organism:
Arabidopsis thaliana
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL17639
18 Samples
Download data: BW
Series
Accession:
GSE195746
ID:
200195746

17.

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA.

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
Platform:
GPL17639
51 Samples
Download data: BED, BW
Series
Accession:
GSE195748
ID:
200195748

PubMed Similar studies

18.

Noncoding RNA HID1 promotes phyB-dependent seed germination by repressing the biosynthesis of ABA [RNA-seq]

(Submitter supplied) Arabidopsis noncoding RNA HID1 acts as a positive regulator to promote phyB-mediated seed germination by modulating the biosynthesis of abscisic acid.
Organism:
Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17639
27 Samples
Download data: TXT
Series
Accession:
GSE195745
ID:
200195745

PubMed Similar studies

19.

Targeted site integration in plants using a transposon system

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Arabidopsis thaliana; Glycine max
Type:
Other
Platforms:
GPL21309 GPL17970
19 Samples
Download data: TSV
Series
Accession:
GSE227105
ID:
200227105

20.

Targeted site integration in plants using a transposon system [insertion-seq]

(Submitter supplied) Genome editing tools with high precision are key to develop improved crops but current technologies to place new DNA into specific locations in plant genomes are low frequency and error-prone. Transposable elements (TEs) evolved to insert their DNA seamlessly into genomes, albeit in a quasi-random pattern. We developed a genome engineering tool that controls the TE insertion site and subsequently the delivery of any cargo attached to this TE. more...
Organism:
Glycine max; Arabidopsis thaliana
Type:
Other
Platforms:
GPL17970 GPL21309
11 Samples
Download data: TSV
Series
Accession:
GSE227104
ID:
200227104

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