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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 20, 2013 |
| Title |
Illumina MiSeq (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Nov 20, 2013 |
| Last update date |
Feb 08, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (563)
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GSM1272330, GSM1272331, GSM1272332, GSM1272333, GSM1272334, GSM1272335
GSM1272336, GSM1272337, GSM1272338, GSM1279837, GSM1279838, GSM1279839, GSM1671792, GSM1671793, GSM1671794, GSM1671795, GSM1671796, GSM1671797, GSM1671798, GSM1671799, GSM1671800, GSM1671801, GSM1671802, GSM1671803, GSM1671804, GSM1671805, GSM1671806, GSM1671807, GSM1671808, GSM1671809, GSM1671810, GSM1671811, GSM1671812, GSM1671813, GSM1671814, GSM1671815, GSM1671816, GSM1671817, GSM1671818, GSM1671819, GSM1671820, GSM1671821, GSM1671822, GSM1671823, GSM1671824, GSM1671825, GSM1671826, GSM1671827, GSM1671838, GSM1671839, GSM1671840, GSM1671851, GSM1671852, GSM1671853, GSM1671854, GSM2451978, GSM2451979, GSM2451980, GSM2451981, GSM2546370, GSM2546371, GSM2546372, GSM2546373, GSM2546374, GSM2546375, GSM2546376, GSM2546377, GSM2546378, GSM2546379, GSM2546380, GSM2546381, GSM2546382, GSM2546383, GSM2546384, GSM2546385, GSM2546386, GSM2546387, GSM2546388, GSM2546389, GSM2546390, GSM2546391, GSM2546392, GSM2546393, GSM2546394, GSM2546395, GSM2546396, GSM2546397, GSM2546398, GSM2546399, GSM2546400, GSM2546401, GSM2546402, GSM2546403, GSM2546404, GSM2546405, GSM2546406, GSM2546407, GSM2546408, GSM2546409, GSM2546410, GSM2546411, GSM2546412, GSM2546413, GSM2546414, GSM2546415, GSM2546416, GSM2546417, GSM2546418, GSM2546419, GSM2546420, GSM2546421, GSM2790179, GSM2790180, GSM2790181, GSM2790182, GSM2790183, GSM2790184, GSM2790185, GSM2790186, GSM2790187, GSM2790188, GSM2790189, GSM2790190, GSM2790191, GSM2790192, GSM2790193, GSM2790194, GSM2790195, GSM2790196, GSM2790197, GSM2790198, GSM2790199, GSM2790200, GSM2790201, GSM2790202, GSM2829912, GSM2829913, GSM2829920, GSM2829921, GSM2901583, GSM2901584, GSM3040333, GSM3040334, GSM3040335, GSM3154209, GSM3154210, GSM3154211, GSM3154212, GSM3154213, GSM3154214, GSM3178795, GSM3178796, GSM3178797, GSM3178798, GSM3178799, GSM3178800, GSM3178801, GSM3178802, GSM3178803, GSM3178804, GSM3178805, GSM3178806, GSM3178807, GSM3178808, GSM3178809, GSM3178810, GSM3178811, GSM3178812, GSM3178813, GSM3178814, GSM3178815, GSM3178816, GSM3327901, GSM3445973, GSM3445974, GSM3445975, GSM3445976, GSM3445977, GSM3445978, GSM3445979, GSM3445980, GSM3530722, GSM3530723, GSM3530724, GSM3530725, GSM3530727, GSM3530728, GSM3567218, GSM3567219, GSM3567220, GSM3567221, GSM3567222, GSM3567223, GSM3569336, GSM3569337, GSM3569338, GSM3569339, GSM3569340, GSM3569341, GSM3638277, GSM3638280, GSM3638284, GSM3638286, GSM3638292, GSM3638293, GSM3638294, GSM3688587, GSM3688588, GSM3712587, GSM3712588, GSM3712589, GSM3712590, GSM3863556, GSM3863557, GSM3863558, GSM3863560, GSM3863561, GSM3863562, GSM3940581, GSM3940584, GSM3940588, GSM3940590, GSM3940596, GSM3940597, GSM3940598, GSM3949148, GSM4083442, GSM4083444, GSM4083445, GSM4083447, GSM4083449, GSM4083450, GSM4083452, GSM4083453, GSM4083455, GSM4083457, GSM4083458, GSM4083460, GSM4368927, GSM4368928, GSM4368929, GSM4368930, GSM4468523, GSM4468524, GSM4468525, GSM4468526, GSM4468527, GSM4468528, GSM4468529, GSM4468530, GSM4468531, GSM4468532, GSM4468533, GSM4468534, GSM4468535, GSM4468536, GSM4468537, GSM4468538, GSM4468539, GSM4468540, GSM4468541, GSM4468542, GSM4468658, GSM4468659, GSM4468660, GSM4544472, GSM4544473, GSM4544474, GSM4551721, GSM4551722, GSM4551723, GSM4551724, GSM4551725, GSM4551726, GSM4551727, GSM4551728, GSM4551729, GSM4551730, GSM4566091, GSM4566092, GSM4566093, GSM4566094, GSM4566095, GSM4566096, GSM4647694, GSM4647695, GSM4647696, GSM4647697, GSM4647698, GSM4647699, GSM4746086, GSM4746087, GSM4746088, GSM4746089, GSM4746090, GSM4746091, GSM4746092, GSM4746093, GSM4746094, GSM4746095, GSM4746096, GSM4746097, GSM4852492, GSM4852493, GSM5044178, GSM5044179, GSM5044180, GSM5044181, GSM5044182, GSM5044183, GSM5044184, GSM5044185, GSM5044186, GSM5044187, GSM5044188, GSM5044189, GSM5044190, GSM5044191, GSM5044192, GSM5044193, GSM5044194, GSM5044195, GSM5044196, GSM5044197, GSM5044198, GSM5044199, GSM5044200, GSM5044201, GSM5044202, GSM5044203, GSM5044204, GSM5044205, GSM5044206, GSM5044207, GSM5044208, GSM5044209, GSM5044210, GSM5044211, GSM5044212, GSM5044216, GSM5044217, GSM5044218, GSM5044219, GSM5044220, GSM5044221, GSM5044222, GSM5044223, GSM5044224, GSM5044225, GSM5044226, GSM5044227, GSM5044228, GSM5044229, GSM5044230, GSM5065814, GSM5065815, GSM5065816, GSM5068916, GSM5141053, GSM5141054, GSM5141056, GSM5141059, GSM5141061, GSM5141063, GSM5456513, GSM5456514, GSM5456515, GSM5456516, GSM5456517, GSM5456518, GSM5456519, GSM5456520, GSM5456521, GSM5494301, GSM5494302, GSM5494303, GSM5494304, GSM5494305, GSM5494306, GSM5494307, GSM5494308, GSM5494309, GSM5494310, GSM5494311, GSM5494312, GSM5494313, GSM5494314, GSM5494315, GSM5494316, GSM5494317, GSM5494318, GSM5494319, GSM5494320, GSM5494321, GSM5494322, GSM5494323, GSM5494324, GSM6320929, GSM6320930, GSM6320931, GSM6320932, GSM6523450, GSM6523451, GSM6523452, GSM6523465, GSM6523466, GSM6523474, GSM6523475, GSM6523476, GSM6523477, GSM6523478, GSM6523479, GSM6523480, GSM6523481, GSM6523482, GSM6523483, GSM6523484, GSM6523485, GSM6523486, GSM6523487, GSM6523488, GSM6523489, GSM6523490, GSM6523491, GSM6523492, GSM6523493, GSM6523494, GSM6523495, GSM6523496, GSM6523497, GSM6523498, GSM6523499, GSM6523500, GSM6523501, GSM6523502, GSM6523503, GSM6523504, GSM6523505, GSM6523506, GSM6523507, GSM6523508, GSM6523509, GSM6523510, GSM6523511, GSM6523512, GSM6523513, GSM6523514, GSM6523515, GSM6523516, GSM6523517, GSM6523518, GSM6523519, GSM6523520, GSM6523521, GSM6523522, GSM6523523, GSM6523524, GSM6523525, GSM6523526, GSM6523527, GSM6523528, GSM6523529, GSM6523530, GSM6523531, GSM6523532, GSM6523533, GSM6523534, GSM6523535, GSM6523536, GSM6523537, GSM6523538, GSM6523539, GSM6523540, GSM6523541, GSM6528562, GSM6528563, GSM6528564, GSM6528565, GSM6528566, GSM6528567, GSM6528568, GSM6528569, GSM6528570, GSM6528571, GSM6528572, GSM6528573, GSM6998246, GSM6998247, GSM6998248, GSM6998249, GSM6998250, GSM6998251, GSM7091723, GSM7091724, GSM7091725, GSM7091726, GSM7091727, GSM7091728, GSM7091729, GSM7091730...
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| Series (65)
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| GSE46986 |
Developmental dynamics of floral gene regulation [ChIP-Seq] |
| GSE46987 |
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development |
| GSE51721 |
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics |
| GSE52596 |
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - III |
| GSE68444 |
rRNA 5-methylcytosine in Arabidopsis thaliana |
| GSE68445 |
tRNA 5-methylcytosine in Arabidopsis thaliana |
| GSE68447 |
Conservation of m5C in rRNA in the kingdom Plantae |
| GSE68448 |
Conservation of m5C in tRNAs in the kingdom Plantae |
| GSE93354 |
3'RACE analyses of Pol V transcript 3' end lengths in mutants of the exonuclease RRP6L1 |
| GSE93360 |
Functional analysis of the RNA polymerase V CTD |
| GSE96946 |
High density mapping of 3' extremities of 5.8S rRNA maturation precursors in Arabidopsis exosome mutants |
| GSE96947 |
High density mapping of 3' extremities of rRNA maturation by-products in Arabidopsis exosome mutants |
| GSE96948 |
High density mapping of 3' extremities of rRNA exosome substrates in Arabidopsis exosome mutants |
| GSE104116 |
Cell layer specific and polysome associated RNA from Arabidopsis thaliana Col0 and hyl1 mutant roots. |
| GSE104117 |
Cell layer specific AGO1-loaded sRNA from dcl234 triple mutant; Cell layer specific and polysome associated RNA from Col0 and hyl1 mutant roots. |
| GSE106114 |
microRNA-triggered transposon small RNAs mediate genome dosage response (sRNA-Seq) |
| GSE106117 |
microRNA-triggered transposon small RNAs mediate genome dosage response |
| GSE108490 |
Genome-wide profiling of EDM3 dependent H3K9me2 in Arabidopsis thaliana |
| GSE111830 |
DNA methylation prevents REF6 binding in Arabidopsis |
| GSE114430 |
ChIP-Seq of Arabidopsis Transcription Factors MYC2 and MYC3 |
| GSE114898 |
Arabidopsis TRM5 encodes a nuclear-localised tRNA guanine-N1-methyltransferase and is important for plant growth |
| GSE115470 |
High density analysis of the tailing and trimming patterns of RISC-cleaved MYB33 and SPL13 transcripts in Arabidopsis heso1 and urt1 mutants |
| GSE121776 |
Genome-wide RNA-Seq of rRNA depleted total RNA from Arabidopsis thaliana WT (Col-0) and pumpkin mutant |
| GSE121777 |
Identification of PUMPKIN RNA targets using RIPSeq |
| GSE121778 |
RNA-Seq and RIP-seq studies for A. thaliana WT and pumpkin mutant |
| GSE124376 |
A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes [Bisulfite-seq] |
| GSE124377 |
A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes [ChIP-seq] |
| GSE124486 |
A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes |
| GSE127759 |
Transcriptome responses to the natural phytotoxin t-chalcone in Arabidopsis thaliana L. |
| GSE128932 |
Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA |
| GSE129411 |
Identification of BSF RNA targets using RIPSeq |
| GSE132441 |
Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria |
| GSE133408 |
The jasmonate-response genome regulatory program is defined by the direct targets of transcription factors MYC2 and MYC3, chromatin modification and gene expression changes |
| GSE134258 |
Transcriptome and binding data indicate that citral inhibits single strand DNA-binding proteins |
| GSE137625 |
Transcriptom analysis of two types of cell death by RNA-seq |
| GSE146249 |
Conformation/Identification of dPPRrcbL RNA targets using RIPSeq |
| GSE148406 |
URT1-mediated uridylation shapes poly(A) tails in Arabidopsis |
| GSE148417 |
Global investigation by TAILseq of mRNA 3' ends in Arabidopsis thaliana flowers |
| GSE148449 |
Molecular connection between the TUTase URT1 and decapping activators |
| GSE150262 |
Identification of SHOT1/MTERF18 binding sites on the mitochondrial genome of Arabidopsis thaliana |
| GSE150528 |
Genome-wide binding of SEPALLATA3 (SEP3) and AGAMOUS (AG) complexes determined by sequential DNA-affinity purification sequencing |
| GSE151082 |
RNAseq experiment to identify differentially expressed genes by AP2 induction in the Shoot Apical Meristem (SAM) of Arabidopsis |
| GSE153588 |
Col-0 anthers, control and iron-deficient |
| GSE156883 |
Transcriptomic changes in sapx tapx, pgr5, and triple mutants under high-light stress |
| GSE160013 |
DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY) |
| GSE165573 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (BSA-seq dataset) |
| GSE165575 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation |
| GSE166205 |
sequential DNA affinity purification sequencing (seq-DAP-seq) data of SEP3-AGAPI |
| GSE181292 |
The histone H3K27 demethylase REF6/JMJ12 Promotes thermomorphogenesis in Arabidopsis |
| GSE201841 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis |
| GSE207842 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [RNA-seq] |
| GSE212292 |
Diversity of phytoviral RNA U-tailing among ss(+) RNA phytoviruses |
| GSE212293 |
Involvement of Arabidopsis TUTases in viral RNA uridylation |
| GSE212355 |
Uridylation is a genomic feature of encapsidated GFLV RNAs [GFLV] |
| GSE212356 |
Uridylation is a genomic feature of encapsidated GFLV RNAs [Purified virions] |
| GSE212358 |
A global survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns |
| GSE223876 |
A tRNA modifying enzyme facilitates RNase P activity in Arabidopsis nuclei |
| GSE227103 |
Targeted site integration in plants using a transposon system [Amplicon] |
| GSE227104 |
Targeted site integration in plants using a transposon system [insertion-seq] |
| GSE227105 |
Targeted site integration in plants using a transposon system |
| GSE230228 |
Pseudouridine in small RNAs |
| GSE235674 |
The ALOG domain defines a new family of plant-specific transcription factors acting during Arabidopsis flower development |
| GSE249506 |
Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways - BSAS data |
| GSE249508 |
Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways |
| GSE254275 |
Trichoderma atroviride small RNA1 targets the Arabidopsis PRIM2 gene to establish a mutualistic relationship |
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| Supplementary data files not provided |
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