GEO Accession viewer

GSE77017	SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions
GSE77170	Arabidopsis GLYCOLATE OXIDASE 1 and 2 display divergent roles under conditions promoting photorespiration
GSE77171	Photorespiratory stress in catalase deficient plants
GSE79259	The second subunit of DNA-polymerase delta is required for genomic stability and epigenetic regulation
GSE79353	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
GSE79354	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq]
GSE79355	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana
GSE79676	Bisulfite-Seq and RNA-seq profiling of Arabidopsis aneuploids
GSE79738	Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis
GSE79746	Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation
GSE80300	A comparative analysis of 5-azacytidine and zebularine induced DNA demethylation using whole-genome bisulfite sequencing
GSE83108	Nascent RNA sequencing reveals distinct features in Plant transcription
GSE83262	Dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator in Arabidopsis
GSE84483	ChIP-seq for Polycomb and associated transcription factors in Arabidopsis
GSE85203	Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
GSE86583	Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis
GSE87170	DNA methylation inheritance across generations
GSE87348	ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis [AGO10OE]
GSE87351	ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis [AGO10SDN]
GSE87355	ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis
GSE89591	DNA sequence properties that determine susceptibility to epiallelic switching [Bisulfite-Seq]
GSE89592	DNA sequence properties that determine susceptibility to epiallelic switching
GSE89768	POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. [ChIP-Seq]
GSE89769	POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis. [RNA-Seq]
GSE89770	POWERDERESS and HDA9 interact and promote histone H3 deacetylation at specific lysine residues in Arabidopsis.
GSE89913	Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies
GSE90061	Whole genome RNA-sequencing from root tips ofArabidopsis thalianalow-phosphate insensitive mutants under High and Low phosphate
GSE90925	Mechanism of early light signaling by the carboxy-terminal output module of Arabidopsis phytochrome B
GSE93024	TET-mediated epimutagenesis of the Arabidopsis thaliana methylome
GSE93358	Functional analysis of the Arabidopsis thaliana Pol V largest subunit, NRPE1, carboxy-terminal domain by whole genome bisulfite sequencing
GSE93360	Functional analysis of the RNA polymerase V CTD
GSE93560	Elf18-induced long noncoding RNA associates with Mediator to enhance expression of innate immune response genes in Arabidopsis
GSE94298	Stable Inheritance of Spontaneous Epialleles in Arabidopsis thaliana
GSE94308	Control of plant cell fate transitions by transcriptional and hormonal signals [RNA-seq: cyc-mock_vs_cyc-dex_3h]
GSE94309	Control of plant cell fate transitions by transcriptional and hormonal signals [RNA-seq: mock_vs_dex_3h]
GSE94311	Control of plant cell fate transitions by transcriptional and hormonal signals
GSE94459	methylC-seq, RNA-seq and sRNA-seq data over Arabidopsis thaliana germination
GSE94900	Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-Seq II]
GSE94983	Genetic Dissection of the Spaceflight Transcriptome Responses in Plants: are some responses unnecessary?
GSE95373	Plant development on ISS differes from the development on the ground and is influenced by the genetic background.
GSE95562	ChIP-seq for Polycomb repressive complex 2 in wild type and mutants in Arabidopsis
GSE95582	During development, the Sku6 mutant roots engage different genes than wild type Col-0 roots, either on the ground or in spaceflight.
GSE95620	During development, the Sku5 mutant roots engage different genes than wild type WS roots, either on the ground or in spaceflight.
GSE95823	Assessment of the Pol IV largest subunit, NRPD1, DeCL domain deletion construct to rescue Pol IV-dependent DNA methylation in the nrpd1-3 mutant (Bisulfite-Seq).
GSE95824	Assessment of the Pol IV largest subunit, NRPD1, DeCL domain deletion construct to rescue Pol IV-dependent siRNAs in the nrpd1-3 mutant (sRNA).
GSE95825	Functional analysis of the Pol IV DeCL domain
GSE96041	Chloroplast signalling gates thermotolerance in Arabidopsis
GSE97288	ENAP1 is involved in ethylene response
GSE99413	RNAseq data for Arabidopsis TF mutants during germination
GSE100298	Dyw2-DYW2_OTP100: Identification of the transcriptome defects (nuclear and organelles) of the T-DNA KO mutants of DYW2 and OTP100
GSE101482	ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells)
GSE101940	ATAC-seq profiling of open chromatin in Arabidopsis thaliana shoot apical meristem stem cells and leaf mesophyll cells.
GSE102126	Whole-genome resequencing of T-DNA insertion lines
GSE103041	Transcriptome expression of WT, 160OE, arf10, arf16, and arf17 Arabidopsis seedlings treated with/without heat stress
GSE103924	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands (HTS)
GSE104665	Chromatin remodeler SPLAYED maintains the balance of miR156 dependent developmental pathways in Arabidopsis
GSE106110	The effect of MAC3 and MAC5A on small RNA accumulation
GSE106112	microRNA-triggered transposon small RNAs mediate genome dosage response (Bisulfite-Seq)
GSE106114	microRNA-triggered transposon small RNAs mediate genome dosage response (sRNA-Seq)
GSE106117	microRNA-triggered transposon small RNAs mediate genome dosage response
GSE108450	The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis
GSE108487	Genome-wide profilings of EDM2-mediated effects on H3K9me2 and transcripts in Arabidopsis thaliana
GSE108490	Genome-wide profiling of EDM3 dependent H3K9me2 in Arabidopsis thaliana
GSE108857	SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production DMS-MaPseq)
GSE108859	SWI/SNF subunit CHR2 remodels pri-miRNAs via microprocessor component SE to inhibit miRNA production
GSE108987	Transcriptome analysis of isoxaben-induced loss of cell wall integrity in Arabidopsis seedling liquid culture
GSE109101	The Evening Complex Establishes Repressive Chromatin Domains via H2A.Z-Nucleosome Deposition in Arabidopsis
GSE109613	Transcriptome analysis of isoxaben-induced loss of cell wall integrity in Arabidopsis nia1/2 mutant
GSE109974	RNA polymerase II activity revealed by GRO-seq and pNET-seq in Arabidopsis
GSE110605	Molecular basis of flowering under natural long-day conditions in Arabidopsis
GSE111284	Singlet oxygen induced RNA oxidation and translational arrest [flu mutant]
GSE111285	Singlet oxygen induced RNA oxidation and translational arrest [DCMU]
GSE111286	Singlet oxygen induced RNA oxidation and translational arrest [CHX]
GSE111287	Singlet oxygen induced RNA oxidation and translational arrest [RB]
GSE111288	Singlet oxygen induced RNA oxidation and translational arrest
GSE112441	Gene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis seedlings
GSE112442	Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock
GSE112443	RNA-seq, ChIP-seq and MNase-seq in WT, fpa mutant and bdr1,2,3 mutant Arabidopsis seedlings
GSE112889	ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis
GSE112950	DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [RNA-seq]
GSE112951	DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis [ChIP-seq]
GSE112952	DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis
GSE112965	Genome-wide mapping of H3K27ac marked regions during flower development
GSE113059	Genome-wide occupancy of BDR1, BDR2 and FPA (ChIP-seq)
GSE113076	Genome-wide profiling of nucleosomes (MNase-seq), total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIP-seq) in wild-type, fpa mutant and bdrs triple mutant
GSE113078	Genome-wide profiling (ChIP-seq) of RNA polymerase II in wild-type, fpa mutant and bdrs triple mutant
GSE113138	Transcript profile analysis suggests marker genes to distinguish between Phase 0 and Phase 1 responses of Arabidopsis to salt stress
GSE113677	Transcription-driven Chromatin Repression of Intragenic Promoters
GSE113894	The KNOXI gene SHOOT MERISTEMLESS regulates floral fate in Arabidopsis
GSE114073	SMA1, a homolog of the splicing factor Prp28, has a multifaceted role in miRNA biogenesis in Arabidopsis
GSE114075	Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation
GSE114185	DEK controls the trade-off between growth and arrest via H2A.Z-nucleosomes in Arabidopsis
GSE114363	Discovery of a novel plant eIF4E-binding protein: Conserved Binding of eIF4E 1 (CBE1)
GSE114418	Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors [2 temperatures at 2 time points]
GSE114615	Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation
GSE114641	Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors [8 time points]
GSE114646	Genome-wide analysis of transcription in dek3 mutants and DEK3-over expressors
GSE114696	Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10 to 17 Nucleotide "Tiny" RNAs.
GSE114958	Virus-mediated export of chromosomal DNA in plants
GSE115001	A spatiotemporal DNA endoploidy map of the Arabidopsis root reveals roles for the endocycle in root development and stress adaptation
GSE115428	Global transcriptomic response to chilling temperature in Col-0 wild type and sig5-3 (SALK_141383C) mutant Arabidopsis plants.
GSE115554	Comparative gene expression analysis in the Arabidopsis thaliana root apex using RNA-seq and microarray transcriptome profiles [RNA-seq]
GSE115555	Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight
GSE115583	Widespread inter-individual gene expression variability in Arabidopsis thaliana
GSE115951	RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling
GSE116004	Contribution of time of day and the circadian clock to the heat stress responsive transcriptome in Arabidopsis
GSE116502	A conserved odor detection pathway via modulation of chromatin and cellular gene expression
GSE116914	Identification of the targets of RNA binding protein NSRa [RIP-seq]
GSE117052	Transcriptome analysis of apoplastic reactive oxygen species signaling in Arabidopsis thaliana accessions with varying ozone sensitivity.
GSE117114	Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana
GSE117199	Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
GSE117296	Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
GSE117297	Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
GSE117298	Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
GSE117300	Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
GSE117344	The nuclear general transcription factor TFIIFa interacts with the Topoisomerase VI complex and selectively controls the expression of genes encoding PPR proteins involved in organellar RNA editing.
GSE117391	Methyl-CpG-binding domain 9 (MBD9) is required for H2A.Z incorporation into chromatin at a subset of H2A.Z-enriched regions in the Arabidopsis genome
GSE117797	ELONGATED HYPOCOTYL 5 mediates blue light signalling to the Arabidopsis circadian clock
GSE117857	Genome-wide validation of the direct regulated targets for 33 nitrogen-early response transcription factors
GSE118695	Methylome of the Arabidopsis mRNA export mutant aly1 and associated controls
GSE118709	Methylome, transcriptome, RIP-seq and small RNA-seq of the Arabidopsis mRNA export mutant aly1 and associated controls
GSE119304	Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
GSE119344	RNA-Seq on mpk8 and tcp14 mutants on dry and imbibited seeds - Dormancy release by phosphorylation
GSE119655	Small is big in Arabidopsis mitochondrial ribosome
GSE120003	Analysis of arabidopsis mutants tor/lst8/yak1/maktor
GSE120519	Natural depletion of H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation
GSE120571	Mobilization of Pack-CACTA transposons in Arabidopsis suggests the mechanism of gene shuffling
GSE121150	Excess light priming in Arabidopsis thaliana genotypes with altered DNA methylomes
GSE121619	Dynamics of gene expression in single root cells of A. thaliana
GSE121927	Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing
GSE122394	DNA methylation and histone H1 jointly repress transposable elements and aberrant intragenic transcripts
GSE122454	AT-hook transcription factors repress petiole growth by antagonizing PIF4 [RNA-seq]
GSE122455	AT-hook transcription factors repress petiole growth by antagonizing PIF4 [ChIP-seq]
GSE122456	AT-hook transcription factors repress petiole growth by antagonizing PIF4
GSE122617	Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction
GSE122677	Transcriptome profiling of Arabidopsis roots upon lateral root induction upon shy2-2 or slr-1 expression
GSE122687	High-throughput single-cell transcriptome profiling of plant cell types
GSE124003	Genome-wide analysis of transcription and PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
GSE124296	H3K4me3 profiling in HUB1 Arabidopsis mutant seedlings
GSE124319	ChIP-seq and RNA-seq in HUB1 and SWD2 Arabidopsis mutant seedlings
GSE124812	RNAseq for finding splicing events in Arabidopsis prefoldin and lsm8 mutants in different environmental conditions
GSE127300	Expression of a dominant‐negative AtNEET‐H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis
GSE127574	Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
GSE127745	PIF7 DNA binding in response to long days with daily oscillating temperatures in Arabidopsis thaliana
GSE128209	Nitrogen and cycloheximide effects on protoplast and TF-target identification in the TARGET assay
GSE128427	RNAseq of Arabidopsis wild-type (WT)-expressing aequorin and card1-2 mutant (WT-expressing aequorin background) in response to DMBQ or DMSO treatment at 0 hr, 0.5 hr, 1 hr and 6 hr
GSE128434	The prevalence, evolution and chromatin signatures of plant regulatory elements
GSE128510	RNA-seq of Arabidopsis wild-type (WT)-expressing aequorin and card1 mutants (WT-expressing aequorin background) in response to DMBQ.
GSE128932	Arabidopsis retrotransposon virus-like-particles and their regulation by epigenetically activated small RNA
GSE129016	Expression levels of inositol phosphorylceramide synthase modulate plant responses to biotic and abiotic stress in Arabidopsis thaliana
GSE129249	Topoisomerase VI participates to a chromatin barrier-like function that prevents heterochromatin spreading in euchromatic islands
GSE129523	Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis
GSE129532	Florigen family chromatin recruitment, competition and targets [ChIP-Seq]
GSE130186	Selective egg cell polyspermy bypasses the triploid block
GSE131227	HOS15 and HDA9 negatively regulate immunity through histone deacetylation on intracellular immune receptor NLR genes in Arabidopsis
GSE131545	Enzymes degraded under high light maintain proteostasis by transcriptional regulation in Arabidopsis
GSE131733	Transient genome-wide adaptations of nascent RNAPII transcription triggered by low temperature
GSE131772	Genome-wide occupancy of BDR1 and BDR3 (ChIP-seq)
GSE132005	Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs
GSE133182	SME1 deficiency results in oxidative stress tolerance
GSE133321	Expression profiling by small RNA-seq for identifying miRNA associated with sound vibration in plant
GSE133325	Identifying genes associated with sound vibration in plant
GSE133618	Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes
GSE134079	Comparative transcriptome analysis of melatonin or auxin treated-Arabidopsis
GSE134271	Lipophilic-Signals Lead to Organ-Specific Gene Expression Changes in Arabidopsis Seedlings
GSE134391	Transcriptomic changes of Arabidopsis plants subjected to high light, heat stress and their combination
GSE134516	A universal, benchtop, gel-free method for the rapid and simultaneous isolation of all known classes of functional small RNAs
GSE135376	Splicing regulation by the lncRNA ASCO
GSE135778	Whole genome RNA-sequencing from root tips of Arabidopsis thaliana med16-2 mutant under High and Low phosphate conditions
GSE136177	A chemical and synthetic biology approach to control plant membrane receptor kinase signaling
GSE136713	DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs
GSE136847	Polymerase IV Plays a Crucial Role in Pollen Development in Capsella
GSE137264	RNA-Seq and ChIP-Seq profiling of ELF3, an prion-like domain-containig in ELF3 that functions as a thermosensor in Arabidopsis.
GSE137474	GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5ʹ and 3ʹ ends of its target genes
GSE137645	ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours
GSE138154	EIN3 positive feedback regulation on EIN2C-mediated histone acetylation and gene expression
GSE138196	Integration of systemic signals in plants
GSE138432	RNAseq in Arabidopsis prefoldin mutants
GSE139715	Rocks in the Auxin Stream: Wound induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration
GSE140294	An intact heterotrimeric G-Protein complex is required for the N-acylethanolamine-induced, transcriptionally-mediated chloroplast response in developing Arabidopsis seedlings
GSE141188	Gene expression profile of Arabidopsis thaliana wild type and siz1-2 mutant during in vitro shoot regeneration on callus inducing media (CIM) and shoot inducing media (SIM)
GSE141547	Arabidopsis MED8 functions in oxidative stress
GSE141597	Naked1 targets Topless to up-regulate Auxin signaling and suppress immunity
GSE141703	LFY is pioneer transcription factor [RNA-seq]
GSE141704	LFY is pioneer transcription factor [ChIP-seq]
GSE141705	LFY is pioneer transcription factor [MNase-seq]
GSE141706	LFY is pioneer transcription factor
GSE141893	Florigen family chromatin recruitment, competition and targets [RNA-Seq]
GSE141894	Florigen family chromatin recruitment, competition and targets
GSE142555	Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay pathways
GSE142628	no treatment / nitrate starvation / nitrate induction-Study of the primary nitrate response (PNR) in nlp2 mutant and WT
GSE142976	Multiple paths of plant host toxicity are associated with the fungal toxin cercosporin
GSE143244	Involvement of Arabidopsis BIG protein in cell death mediated by Myo-Inositol homeostasis
GSE144047	Transcriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem [ChIP-seq]
GSE144049	Transcriptional regulation of cell division and cytokinin response in Arabidopsis shoot apical meristem
GSE144560	Search for mitochondrial editing defect in an Arabidopsis PPR mutant
GSE144674	half_edit - A new predictive method for E+ PPR binding
GSE144849	Transcriptome analysis for comparing the overlap mis-regulated genes between impα triple and lhp1-3 mutants.
GSE145109	The m6A reader CPSF30-L regulates alternative polyadenylation affecting nitrate signaling in Arabidopsis
GSE145208	A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis (microRNA)
GSE145209	A dynamic network reveals the novel characteristics of miRNA regulation over time in response to the ABA hormone in Arabidopsis
GSE145488	A dynamic pattern of local auxin sources is required for root regeneration
GSE145580	Transcriptome profiling following knockdown of NAA50 in Arabidopsis
GSE146913	Broad non-coding transcription suggests genome surveillance by RNA Polymerase V
GSE147245	Small RNA-dependent epigenetic modifications in Arabidopsis thaliana embryos
GSE147542	The position and complex genomic architecture of plant T-DNA insertions revealed by 4C
GSE147962	Multifactorial stress combination
GSE149654	Effect of flg22 peptide over transcriptome and nucleosome landscape of Arabidopsis on Col-0 and chromatin remodelling ATPase EDA16 mutants
GSE149686	Warm temperature-triggered developmental reprogramming requires VIL1-mediated, genome-wide H3K27me3 accumulation in Arabidopsis
GSE151005	Analysis of NPC48 overexpressing in Arabidopsis roots
GSE151223	effect of ethylene rna-seq-RNA-seq ± Ethylene
GSE151376	Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis
GSE151449	The Arabidopsis epigenetic regulator ICU11 as an accessory protein of Polycomb Repressive Complex 2
GSE152163	Transcriptome analysis of p35S:AtBBD1 and atbbd1 (Knock-out) under PEG-induced drought stress condition
GSE152166	Differentially expressed genes between WT and HRE1α OX, WT and HRE1β OX, and WT and AtRH17 OX
GSE152405	ConnecTF: A platform to integrate validated transcription factor-target interactions to build and refine gene regulatory networks
GSE152454	Transcriptome analysis of Arabidopsis thaliana roots, H2O2 and Rose Bengal [20180920_172844_1O_H2O2]
GSE152455	Transcriptome analysis of Arabidopsis thaliana roots, H2O2 and Rose Bengal [20180920_173313_H2O2_RB]
GSE152456	Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20190311_172119_Peg_SHAMf1_res]
GSE152457	Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20190613_174740_sham_cont]
GSE152458	Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20191204_125511_PEG_SHOCK_II]
GSE152459	Transcriptome analysis of Arabidopsis thaliana shoots and roots, exposed to PEG-induced osmotic shock, PEG+Histidine, PEG+SHAM [20191204_130529_uLox_PEG_Shock]
GSE152462	A role for lipoxygenase in the production of 1O2 and promoting the root's response to osmotic stress in Arabidopsi
GSE152909	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading [sRNA-seq]
GSE152911	Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading
GSE153055	AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
GSE153171	The Root-Knot Nematode Effector MiEFF18 Targets the Core Spliceosomal Protein SmD1 and Facilitates Giant Cell Formation
GSE154473	DEAD-box RNA helicase 27-Mediated MicroRNA Biogenesis Is Essential for Zygote Division and Stem Cell Homeostasis in Arabidopsis
GSE155105	Chemical genetics approach identifies ABNORMAL INFLORESCENCE MERISTEM 1 as a putative target of a novel sulfonamide that protects Arabidopsis against photorespiratory stress [RNA-seq]
GSE155502	Polycomb-dependent differential chromatin compartmentalization determines gene co-regulation in Arabidopsis
GSE156268	A glycolytic enzyme enoalse negatively regulates plant immunity by repressing intracellular immune receptor NLR genes
GSE156677	Autophagy mutants show delayed chloroplast development during de-etiolation in carbon limiting conditions
GSE157145	Transcriptional and imprinting complexity in Arabidopsis seeds at single-nucleus resolution
GSE157823	A pair of effectors in a conditionally dispensable chromosome of Fusarium oxysporum suppresses host-specific immunity
GSE157965	Changes in DNA methylation in Arabidopsis thaliana plants exposed over multiple generations to gamma radiation
GSE158444	Time of day prioritizes the pool of translating mRNAs in response to heat stress
GSE158761	A single cell view of the transcriptome during lateral root initiation
GSE158809	Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis
GSE159988	Genome-wide maps of H3K27me3 states in Arabidopsis thaliana flowers.
GSE160410	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats (ChIP-RX)
GSE160411	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats (ChIP-Seq)
GSE160414	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats
GSE161332	Single cell RNA sequencing of Col-0 leaf cell
GSE161366	Histone H2B.8 compacts flowering plant sperm through chromatin phase separation
GSE161482	Unique and distinct identities and functions of leaf phloem cells revealed by single cell transcriptomics
GSE161625	Nurse cell-derived small RNAs define paternal epigenetic inheritance in Arabidopsis
GSE161704	Natural variation in activation of KAI2/HTL pathway promotes germination in the dark in Arabidopsis
GSE161970	Transcriptional dissection of lateral root primordium cells
GSE162242	RNAseq Analysis of wild type and nrt1.13 in normal or low nitrate condition
GSE163190	Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
GSE163742	RNA-Seq of Col-0, dek3-2, dek4-2, and dek3-2 dek4-2 (dd-2) 7-day-old seedlings in Arabidopsis
GSE163850	Chromatin architectural proteins regulate flowering time by precluding gene looping
GSE164159	Evolution of conserved noncoding sequences (CNS) in Arabidopsis thaliana
GSE166446	Riboseq analysis of the rfl8 mutant-Functional characterization of the pentatricopeptide repeat protein PPR RFL8
GSE166447	RNaseI-RIPseq for rfl8-Functional characterization of the pentatricopeptide repeat protein PPR RFL8
GSE166459	Nuclear compensation to a lineage-specific mitochondrial genomic rearrangement in plants
GSE166543	Ribosomes act as cryosensors in plants
GSE167135	Single-Cell Resolution of Lineage Trajectories in the Arabidopsis Stomatal Lineage and Developing Leaf
GSE167879	The lncRNA APOLO and the methylcytosine-binding protein VIM1 are thermomorphogenesis regulators
GSE168385	RNAseq samples of CNQX treated Arabidopsis roots regenerating at different time points.
GSE168869	Reinforcement of transcriptional silencing by a positive feedback between DNA methylation and non-coding transcription
GSE171157	Heterochromatin is a quantitative trait locus associated with spontaneous epiallele formation
GSE171198	Repression of CHROMOMETHYLASE 3 Prevents Epigenetic Collateral Damage in Arabidopsis
GSE171411	tRNA-seq of Arabidopsis leaves during pattern-triggered immunity
GSE171459	A RALF-like peptide EaF82 derived from Epipremnum aureum inhibits pollen development in Arabidopsis and tobacco
GSE171922	Characterization of 35S::TT2 and 35S::MYB5 overexpressors RUN2
GSE173338	Deceleration of the cell cycle underpins a switch from proliferative to terminal division in plant stomatal lineage
GSE173375	RNA-seq analysis of dark-induced senescence of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants
GSE173426	Nuclear and cytoplasmic RNA exosomes and PELOTA limit miRNA-induced secondary siRNA production
GSE173834	The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution
GSE174573	Two novel proteins with opposing m6A writing functions interact with HAKAI [meRIP-seq]
GSE174656	AG- and AP3- domain specific FANS RNA-seq
GSE175963	Whole-genome transcriptome analysis of tomato and Arabidopsis roots in the shade
GSE176161	Gene expression during hormone-induced shoot regeneration in Arabidopsis thaliana explants exposed to different temperatures
GSE176526	Linker histone H1 drives heterochromatin condensation via phase separation in Arabidopsis
GSE177028	Chaperone-like protein DAY plays critical roles in photomorphogenesis
GSE178565	Mismatch hpRNA prevents intrinsic self-silencing and enhances RNAi stability
GSE178645	Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells
GSE178684	Molecular properties of epimutation hotspots
GSE179635	Differential gene expression in seedlings of pi4kb1b2-Study of pi4kb1b2 mutant
GSE179796	Histone H1 prevents non-CG methylation-mediated small RNA biogenesis in Arabidopsis heterochromatin
GSE180818	Redundancies in low K signaling of neo-tetraploids leads in increased shoot K [RNA-seq_2]
GSE180819	Redundancies in low K signaling of neo-tetraploids leads in increased shoot K
GSE181260	Regulation of transpiration hinges on spatial differences in abscisic acid perception
GSE182331	A single-cell transcriptomic atlas of A. thaliana seed germination
GSE183118	Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes
GSE183209	A GRAS family transcription factor negatively regulates cell division and positively affects cell size through SIM/SMR transcription
GSE183785	Epigenetic inheritance mediates phenotypic evolution in natural populations
GSE185033	Single seeds exhibit transcriptional heterogeneity during secondary dormancy induction
GSE185225	Transcriptomics study of a temperature sensitive mutant (E170K, shot2) in CstF77, a subunit of 3' end mRNA maturation complex in Arabidopsis thaliana
GSE186212	The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis [RNA-seq]
GSE186214	The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis [ChIRP-seq]
GSE186215	The trans-acting long noncoding RNA FLAIL represses flowering in Arabidopsis.
GSE186586	mtran-Transcriptome analysis of mutants in uncharacterised mitochondrial proteins
GSE186836	Evolutionarily conserved bacterial effectors hijack abscisic acid signaling to induce an aqueous microenvironment in the apoplast
GSE187461	Chromatin-associated Microprocessor assembly is regulated by PRP40 – U1 snRNP auxiliary protein
GSE188610	Two novel proteins with opposing m6A writing functions interact with HAKAI [RNA-seq]
GSE188611	Two zinc finger proteins with functions in m6A writing interact with HAKAI
GSE189262	SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days [ChIP-seq]
GSE189264	SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days [RNA-seq]
GSE189265	SUPPRESSOR OF PHYTOCHROME B4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days
GSE190825	Linker histones mediate sequence-specific regulation of chromosomal organization and H3K27me3 enrichment over genes and telomeric repeats [TRB1-GFP ChIP-seq]
GSE192382	Influence of the downregulation of the MARS lncRNA (AT5G00580) of the response to Abscisic acid (ABA) in Arabidopsis
GSE192407	HSFA2 and HSFA3 binding after heat acclimation [DAP-seq]
GSE192427	HSFA2 and HSFA3 binding after heat acclimation [ChIP-seq]
GSE192431	HSFA2 and HSFA3 binding after heat acclimation
GSE192469	ELONGATED HYPOCOTYL (HY5) AND HY5 HOMOLOG (HYH) maintain shade avoidance suppression in sunlight
GSE195912	Transcriptomic changes upon NaCl treatment dependent on GA biosynthesis and signaling.
GSE196869	The application of a reverse transcriptase inhibitor suppresses LTR retrotransposon mobilization in plants [RNA-seq]
GSE196969	PIF4/HEMERA-mediated daytime thermosensory growth requires the Mediator subunit MED14
GSE197099	TOR early response genes in plant shoots
GSE197357	Identification of NLP2 in vivo targets using ChIP-Seq in Arabidopsis thaliana
GSE197581	Clock controlled and cold induced CDF6 alters growth and development to changing temperatures
GSE197614	RTEL1 is involved in transcriptional gene silencing and inhibition of heterochromatic DNA methylation
GSE197718	A balance of de novo and maintenance activities governs epigenetic inheritance of CG methylation in Arabidopsis transposons
GSE197932	RNAseq Quantitative Analysis of Arabidopsis Wild Type versus flavonoid 3' hydroxylase tt7 mutant
GSE198873	In vitro, genomic context identification of transcription factor binding sites for bZIP C/S1 homodimers and heterodimers
GSE199039	RRC1 is required for epidermal phyB siganling by maintaining the circadian rhythm by suppressing the alternative splicing of core clock genes.
GSE199202	Transcriptome profiling of Arabidopsis roots upon lateral root induction in WT and TOR knock down [dataset1]
GSE199203	Profiling of bulk and ribosome associated mRNA of Arabidopsis roots upon lateral root induction upon TOR activity inhibition with AZD8055 [dataset2]
GSE199211	TOR acts as metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana
GSE199312	Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1
GSE200247	RNA-seq experiment of wild-type (WT) and pif4 mutant seedlings grown for 3 days in darkness and exposed or not to heat stress for 3 hours.
GSE201015	Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation
GSE201233	AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [smallRNA-seq]
GSE201234	AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [WGBS]
GSE201235	Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention
GSE201648	RNA-seq analysis of Arabidopsis root with MBZ treatment
GSE201838	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [DRIP-seq]
GSE201839	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [Hi-C]
GSE201840	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [sRNA-seq]
GSE201841	Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis
GSE203310	Dormancy heterogeneity among Arabidopsis thaliana seeds is linked to individual seed size
GSE204767	Auxin biosynthesis drives developmental reprogramming of differentiated cells
GSE204774	CONSTANS and jasmonate signaling coordinate floral senescence in Arabidopsis
GSE204837	A quantitative model of MET1-catalyzed establishment and epigenetic inheritance of DNA methylation
GSE205861	Plastid and cytoplasmic origins of 1O2-mediated gene responses
GSE205893	Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [RNA-Seq]
GSE206054	Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [ChIP-Seq]
GSE206055	Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process
GSE206890	Multi-omics profiling of 5 Arabidopsis accessions in response to combined water and nitrogen deficiencies
GSE207358	Influence of the downregulation of the ARES lncRNA (AT4G14548) on gene regulation in Arabidopsis thaliana
GSE207509	Transcriptomic analyses to estimated poly(A)-tail lengths in paps1-1 mutant pollen tubes
GSE208151	Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation
GSE210734	RNA-seq analysis of total RNA from inflorescence stems of Arabidopsis Col-0, ccr-1, fer-4 and ccr-1/fer-4
GSE210828	The Human UPAT and the Arabidopsis APOLO lncRNA regulated a comparable set of genes in Arabidopsis
GSE211494	Retrograde Control of Cytosolic Translation Targets Synthesis of Plastid Proteins and Nuclear Responses for High-Light Acclimation.
GSE212021	HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ncRNA-Seq]
GSE212022	HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress
GSE212826	Gene expression profile of Arabidopsis root tip cells exposed to 2 hours of 50µM jasmonate
GSE218234	Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory
GSE218481	ChIP-seq analysis of E2FA, E2FB, E2FC and RBR targets
GSE218944	Local light signalling at the leaf tip drives remote differential petiole growth through auxin-gibberellin dynamics
GSE220449	Dissecting the Arabidopsis/downy mildew interaction by haustoriated cell-specific RNA profiling
GSE222657	CONSTANS alters the circadian clock in Arabidopsis thaliana
GSE222751	Pseudouridine in small RNAs
GSE222967	Transcriptomic analysis of rps6 mutants in Arabidopsis thaliana
GSE223459	Genomic methylation patterns in pre-meiotic gynoecia of wild-type and RdDM mutants of Arabidopsis
GSE223589	Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence [RNA-Seq]
GSE223590	Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence [ncRNA-Seq]
GSE223591	Coding and noncoding transcriptomes of NODULIN HOMEOBOX (NDX) deficient Arabidopsis inflorescence
GSE224214	RNAseq analysis of wild-type and npf8.4 under normal or 2-day N-depleted condition
GSE224694	Oxygen-sensing through ERFVII action and modulation in Arabidopsis thaliana
GSE224928	Transcriptome of radially growing Arabidopsis wild type and d14 mutant hypocotyls with single cell resolution revealed by nucleus RNA-seq using 10x Chomium and VASA-seq
GSE226508	Guidelines for performing Ribosome Profling in Plants Including Structural Analysis of rRNA fragments
GSE227564	Identification of cell-types in Arabidopsis callus
GSE230100	DRMY1 promotes robust morphogenesis by sustaining translation of a hormone signaling protein
GSE230228	Pseudouridine in small RNAs
GSE231563	Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [ChIP-seq]
GSE231564	Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation [bisulfite-seq]
GSE231565	Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation.
GSE233271	COP1 controls light-dependent chromatin remodeling in Arabidopsis [ChIP-Seq]
GSE233272	COP1 controls light-dependent chromatin remodeling in Arabidopsis [RNA-Seq]
GSE233273	COP1 controls light-dependent chromatin remodeling in Arabidopsis
GSE233927	Comparative analysis of nascent transcription among plant species
GSE234377	ideas-IDEAS project on nitrogen starvation
GSE236147	ELONGATED HYPOCOTYL5-mediated light signaling promotes shoot regeneration in Arabidopsis thaliana
GSE236628	The unique dual targeting of AGO1 by two types of PRMT enzymes promotes phasiRNA loading in Arabidopsis thaliana
GSE242191	CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing.
GSE244846	The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide [ChIP-seq]
GSE244848	The plant POLYMERASE ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome-wide [RNA-seq]
GSE244850	The plant POLYMERASE-ASSOCIATED FACTOR1 complex links transcription and H2B monoubiquitination genome wide
GSE247242	rna-seq snap33-1 vs wt -Description of Arabidopsis thaliana t-SNARE SNAP33
GSE247348	Transcriptomic landscape of seedstick in Arabidopsis thaliana funiculus after fertilisation
GSE248560	Identification of SR34a direct RNA targets in germinated seeds grown for 44 hours and exposed or not to ABA for 2 hours
GSE248563	sr34a-1 mutant germinated seeds and exposure to ABA
GSE249507	Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways - AGO-IP data
GSE249508	Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways
GSE249562	Imprinting but not cytonuclear interactions affects parent-of-origin effect on seed size in Arabidopsis hybrids
GSE250329	Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition (csRNA-seq)
GSE250331	Interplay between coding and non-coding regulation drives the Arabidopsis seed-to-seedling transition.
GSE264403	Identification of cambium stem cell factors and their positioning mechanism
GSE266158	Rhamnogalacturonan Lyase 1 (RGL1), as a suppressor of E3 ubiquitin ligase Arabidopsis thaliana Ring Zinc Finger 1 (AtRZF1), is involved in dehydration response to mediate proline synthesis and pectin rhamnogalacturonan-Ⅰ composition
GSE267648	Time series study of ABA-treated Arabidopsis thaliana rosettes [Illumina TruSeq mRNA Stranded Sample Prep Kit]
GSE267649	Time series study of ABA-treated Arabidopsis thaliana rosettes
GSE267947	Terminal nucleotidyl transferases govern secondary siRNA production at distinct steps in plants
GSE269849	bHLH transcription factors cooperate with chromatin remodelers to regulate cell fate decisions during Arabidopsis stomatal development