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GEO accession:
Series GSE62486
Query DataSets for GSE62486
Status
Public on Jun 08, 2016
Title
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
27292648
Submission date
Oct 18, 2014
Last update date
May 15, 2019
Contact name
Richard Jenner
E-mail(s)
r.jenner@ucl.ac.uk
Organization name
UCL Cancer Institute
Department
Cancer Biology
Lab
Regulatory Genomics
Street address
72 Huntley Street
City
London
ZIP/Postal code
WC1E 6BT
Country
United Kingdom
Platforms (4)
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GPL10787
Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Probe Name version)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL13607
Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)
Samples (143)
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GSM1527676
Homo sapiens Th1 Native H3
GSM1527677
Homo sapiens Th1 Native H3K4me3
GSM1527678
Homo sapiens Th2 Native H3
GSM1527679
Homo sapiens Th2 Native H3K4me3
GSM1527680
Homo sapiens Th1 PI K27ac
GSM1527681
Homo sapiens Th2 PI K27ac
GSM1527682
Homo sapiens WT Th1 T-bet
GSM1527683
Homo sapiens WT Th1 Input
GSM1527684
Mus musculus EL4 T-bet plusPI Input
GSM1527685
Mus musculus EL4 GFP plusPI pTEF-b
GSM1527686
Mus musculus EL4 T-bet plusPI pTEF-b
GSM1527687
Mus musculus EL4 GFP plusPI Input
GSM1527688
Homo sapiens WT Th1 H3 for K27ac
GSM1527689
Homo sapiens WT Th2 H3 for K27ac
GSM1527690
Mus musculus WT-Th1 NA Input
GSM1527691
Mus musculus T-betKO-Th1 NA Input
GSM1527692
Mus musculus WT-Th2 NA Input
GSM1527693
Homo sapiens Th1 reactivated pTEFb
GSM1527694
Homo sapiens Th2 reactivated pTEFb
GSM1527695
Homo sapiens Th1 unstimulated PolII-N20
GSM1527696
Homo sapiens Th1 reactivated PolII-N20
GSM1527697
Homo sapiens Th2 unstimulated PolII-N20
GSM1527698
Homo sapiens Th2 reactivated PolII-N20
GSM1527699
Homo sapiens Th1 reactivated Input rep1
GSM1527700
Homo sapiens Th2 reactivated Input rep1
GSM1527701
Homo sapiens Th1 reactivated Input rep2
GSM1527702
Mus musculus WT-Th1 NA pTefb
GSM1527703
Mus musculus T-betKO-Th1 NA pTefb
GSM1527704
Mus musculus WT-Th2 NA pTefb
GSM1527705
Homo sapiens Th2 reactivated Input rep2
GSM1527706
Homo sapiens Th1 US PolII-N20
GSM1527707
Homo sapiens Th2 US PolII-N20
GSM1527708
Homo sapiens Th1 RA PolII-N20
GSM1527709
Homo sapiens Th2 RA PolII-N20
GSM1527710
Homo sapiens Th1 US PTEF-b
GSM1527711
Homo sapiens Th2 US PTEF-b
GSM1527712
Homo sapiens Th1 US Input
GSM1527713
Homo sapiens Th2 US Input
GSM1527714
Mus musculus EL4-GFP US PTEF-b
GSM1527715
Mus musculus EL4-T-bet US PTEF-b
GSM1527716
Mus musculus EL4-GFP US Input
GSM1527717
Mus musculus EL4-T-bet US Input
GSM1527718
Homo sapiens Th1 RA IgG
GSM1527719
Homo sapiens Th2 RA IgG
GSM1527720
CD4 naïve mRNA rep1
GSM1527721
Th1 d13 unstimulated mRNA rep1
GSM1527722
Th1 d13 reactivated mRNA rep1
GSM1527723
Th2 d13 unstimulated mRNA rep1
GSM1527724
Th2 d13 reactivated mRNA rep1
GSM1527725
Th1 d13 unstimulated total RNA rep1
GSM1527726
Th1 d13 reactivated total RNA rep1
GSM1527727
Th2 d13 unstimulated total RNA rep1
GSM1527728
Th2 d13 reactivated total RNA rep1
GSM1527729
CD4 naïve mRNA rep2
GSM1527730
Th1 d13 unstimulated mRNA rep2
GSM1527731
Th1 d13 reactivated mRNA rep2
GSM1527732
Th2 d13 unstimulated mRNA rep2
GSM1527733
Th2 d13 reactivated mRNA rep2
GSM1527734
Th1 d13 unstimulated total RNA rep2
GSM1527735
Th1 d13 reactivated total RNA rep2
GSM1527736
Th2 d13 unstimulated total RNA rep2
GSM1527737
Th2 d13 reactivated total RNA rep2
GSM1527738
Donor1 day 7 Th1
GSM1527739
Donor1 day 13 Th1 unactivated
GSM1527740
Donor1 day 13 Th1 activated
GSM1527741
Donor2 day 7 Th1
GSM1527742
Donor2 day 13 Th1 unactivated
GSM1527743
Donor2 day 13 Th1 activated
GSM1527744
Donor3 day 7 Th1 unactivated
GSM1527745
Donor3 day 7 Th1 activated
GSM1527746
Donor3 day 13 Th1 unactivated
GSM1527747
Donor3 day 13 Th1 activated
GSM1527748
Donor1 day 7 Th2
GSM1527749
Donor1 day 13 Th2 unactivated
GSM1527750
Donor1 day 13 Th2 activated
GSM1527751
Donor2 day 7 Th2
GSM1527752
Donor2 day 13 Th2 unactivated
GSM1527753
Donor2 day 13 Th2 activated
GSM1527754
Donor3 day 7 Th2 unactivated
GSM1527755
Donor3 day7 Th2 activated
GSM1527756
Donor3 day 13 Th2 unactivated
GSM1527757
Donor3 day 13 Th2 activated
GSM1527758
Donor1 Naïve
GSM1527759
Donor2 Naïve
GSM1527760
Donor3 Naïve
GSM1527761
Th1 cells DMSO control 6 hrs unstimulated
GSM1527762
Th1 cells DMSO control 6 hrs reactivated
GSM1527763
Th1 cells DMSO control 24 hrs unstimulated
GSM1527764
Th1 cells DMSO control 24 hrs reactivated
GSM1527765
Th2 cells DMSO control 24 hrs unstimulated
GSM1527766
Th2 cells DMSO control 24 hrs reactivated
GSM1527767
Th1 cells 50 nM JQ1 treatment 6 hrs unstimulated
GSM1527768
Th1 cells 50 nM JQ1 treatment 6 hrs reactivated
GSM1527769
Th1 cells 500 nM JQ1 treatment 6 hrs unstimulated
GSM1527770
Th1 cells 500 nM JQ1 treatment 6 hrs reactivated
GSM1527771
Th1 cells 500 nM JQ1 treatment 24 hrs unstimulated
GSM1527772
Th1 cells 500 nM JQ1 treatment 24 hrs reactivated
GSM1527773
Th2 cells 50 nM JQ1 treatment 6 hrs unstimulated
GSM1527774
Th2 cells 50 nM JQ1 treatment 6 hrs reactivated
GSM1527775
Th2 cells 500 nM JQ1 treatment 6 hrs unstimulated
GSM1527776
Th2 cells 500 nM JQ1 treatment 6 hrs reactivated
GSM1527777
Th1 cells 1 µM Flavopiridol treatment 6 hrs unstimulated
GSM1527778
Th1 cells 1 µM Flavopiridol treatment 6 hrs reactivated
GSM1527779
Th1 cells 10 µM Flavopiridol treatment 6 hrs unstimulated
GSM1527780
Th1 cells 10 µM Flavopiridol treatment 6 hrs reactivated
GSM1527781
Th2 cells 1 µM Flavopiridol treatment 6 hrs unstimulated
GSM1527782
Th2 cells 1 µM Flavopiridol treatment 6 hrs reactivated
GSM1527783
Th2 cells 10 µM Flavopiridol treatment 6 hrs unstimulated
GSM1527784
Th2 cells 10 µM Flavopiridol treatment 6 hrs reactivated
GSM1961537
Mus musculus Th1 RA H3
GSM1961538
Mus musculus Th1 RA H3K4me3
GSM1961539
Mus musculus T-bet-KO-Th1 RA H3
GSM1961540
Mus musculus T-bet-KO-Th1 RA H3K4me3
GSM1961541
Homo sapiens CCR5-Th1 RA H3
GSM1961542
Homo sapiens CCR5-Th1 RA H3K4me3
GSM1961543
Mus musculus EL4-T-bet Plum FLAG-T-bet
GSM1961544
Mus musculus EL4-Gata3 GFP FLAG-T-bet
GSM1961545
Mus musculus EL4-GFP RA RelA
GSM1961546
Mus musculus EL4-T-bet RA RelA
GSM1961547
Mus musculus EL4-T-bet RA Brd4
GSM1961548
Mus musculus EL4-GFP RA Brd4
GSM1961549
Mus musculus EL4-GFP RA Med1
GSM1961550
Mus musculus EL4-T-bet RA Med1
GSM1961551
Mus musculus EL4-GFP RA Aff4
GSM1961552
Mus musculus EL4-T-bet RA Aff4
GSM1961553
Mus musculus WT-Th1 RA RelA
GSM1961554
Mus musculus T-bet-KO-Th1 RA RelA
GSM1961555
Mus musculus WT-Th1 RA Brd4
GSM1961556
Mus musculus T-bet-KO-Th1 RA Brd4
GSM1961557
Mus musculus WT-Th1 RA Med1
GSM1961558
Mus musculus T-bet-KO-Th1 RA Med1
GSM1961559
Mus musculus WT-Th1 RA Aff4
GSM1961560
Mus musculus T-bet-KO-Th1 RA Aff4
GSM1961561
Homo sapiens Th1 RA p65 SC
GSM1961562
Homo sapiens Th1 BAY p65 SC
GSM1961563
Homo sapiens Th1 RA Aff4
GSM1961564
Homo sapiens Th1 BAY Aff4
GSM1961565
Homo sapiens Th1 RA Brd4
GSM1961566
Homo sapiens Th1 BAY Brd4
GSM1961567
Homo sapiens Th1 RA Med1
GSM1961568
Homo sapiens Th1 BAY Med1
GSM1961569
Homo sapiens Th1 DMSO P-TEFb
GSM1961570
Homo sapiens Th1 BAY P-TEFb
This SuperSeries is composed of the following SubSeries:
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GSE62482
T-bet activates poised Th1 genes through Mediator and the Super Elongation Complex [ChIP-Seq]
GSE62483
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation (RNA-Seq)
GSE62484
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation (Agilent 1)
GSE62485
T-bet recruits P-TEFb to super-enhancers to regulate T helper cell differentiation (Agilent 2)
Relations
BioProject
PRJNA264230
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE62486_RAW.tar
402.0 Mb
(http)
(custom)
TAR (of BED, GTF, TXT)
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