NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8432 Query DataSets for GPL8432
Status Public on Apr 13, 2009
Title Illumina HumanRef-8 WG-DASL v3.0
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
 
Description The Whole-Genome DASL® Assay enables sensitive, reproducible, cost-effective gene expression profiling of low-abundance and partially degraded RNA, such as that found in formalin-fixed, paraffin-embedded (FFPE) samples. Over 24,000 targets can be analyzed at once. The Whole-Genome DASL Assay combines the proven DASL (cDNA-mediated Annealing, Selection, and Ligation) Assay and the HumanRef-8 Expression BeadChip currently used in Illumina’s Direct Hybridization Expression Assays to create an accurate, easy-to-use, higher multiplex assay. Each BeadChip contains eight arrays for simultaneous processing of eight samples. Chosen targets provide genome-wide transcriptional coverage of well-characterized National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq Build 36.2, Release 22) genes.

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
 
Submission date Apr 13, 2009
Last update date May 14, 2015
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (3754) GSM391713, GSM391716, GSM391720, GSM391721, GSM391725, GSM391727 
Series (49)
GSE15654 Gene-expression profiles of hepatitis C-related, early-stage liver cirrhosis
GSE15779 Gene expression analysis of pluripotent stem cells
GSE19580 Gene expression in Calu-3 cells after influenza H3N2 and H11N9 infection
Relations
Alternative to GPL16807 (gene-centered version)

Data table header descriptions
ID Unique identifier for the probe (across all products and species)
Species
Source Transcript sequence source name
Search_Key Internal id useful for custom design array
Transcript Internal transcript id
ILMN_Gene Internal gene symbol
Source_Reference_ID Id in the source database
RefSeq_ID Refseq id
Entrez_Gene_ID Entrez gene id
GI Genbank id
Accession Genbank accession number
Symbol Gene symbol from the source database
Protein_Product Genbank protein accession number
Probe_Id
Array_Address_Id Decoder id
Probe_Type Information about what this probe is targeting
Probe_Start Position of the probe relative to the 5' of the source transcript sequence
SEQUENCE Probe sequence
Chromosome Chromosome
Probe_Chr_Orientation Orientation on the NCBI genome built
Probe_Coordinates genomic position of the probe on the NCBI genome build 36 version 3
Cytoband
Definition Gene description from the source
Ontology_Component Cellular component annotations from Gene Ontology project
Ontology_Process Biological process annotations from Gene Ontology project
Ontology_Function Molecular function annotations from Gene Ontology project
Synonyms Gene symbol synonyms from Refseq
Obsolete_Probe_Id Identifier of probe id before bgx time
GB_ACC

Data table
ID Species Source Search_Key Transcript ILMN_Gene Source_Reference_ID RefSeq_ID Entrez_Gene_ID GI Accession Symbol Protein_Product Probe_Id Array_Address_Id Probe_Type Probe_Start SEQUENCE Chromosome Probe_Chr_Orientation Probe_Coordinates Cytoband Definition Ontology_Component Ontology_Process Ontology_Function Synonyms Obsolete_Probe_Id GB_ACC
ILMN_2161508 Homo sapiens RefSeq ILMN_13666 ILMN_13666 PHTF2 NM_020432.2 NM_020432.2 57157 40254932 NM_020432.2 PHTF2 NP_065165.2 ILMN_2161508 940066 S 3100 GAAACACTGGGCTGTTTGCACAGCTCCAACTGTGCATGCTCAAAATGTGC 7 + 77422797-77422846 7q11.23g-q21.11a Homo sapiens putative homeodomain transcription factor 2 (PHTF2), mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [pmid 11256614] [evidence IDA] The synthesis of either RNA on a template of DNA or DNA on a template of RNA [goid 6350] [evidence IEA]; Any process that modulates the frequency, rate or extent of DNA-dependent transcription [goid 6355] [evidence IEA] Interacting selectively with DNA (deoxyribonucleic acid) [goid 3677] [evidence IEA] DKFZP564F013; MGC86999; FLJ33324 DKFZP564F013; FLJ33324; MGC86999 NM_020432.2
ILMN_1796063 Homo sapiens RefSeq ILMN_5006 ILMN_5006 TRIM44 NM_017583.3 NM_017583.3 54765 29029528 NM_017583.3 TRIM44 NP_060053.2 ILMN_1796063 1300239 S 2901 CCTGCCTGTCTGCCTGTGACCTGTGTACGTATTACAGGCTTTAGGACCAG 11 + 35786070-35786119 11p13a Homo sapiens tripartite motif-containing 44 (TRIM44), mRNA. MGC3490; MC7; HSA249128; DIPB MGC3490; MC7; HSA249128; DIPB NM_017583.3
ILMN_1668162 Homo sapiens RefSeq ILMN_7652 ILMN_7652 DGAT2L3 NM_001013579.1 NM_001013579.1 158833 61888901 NM_001013579.1 DGAT2L3 NP_001013597.1 ILMN_1668162 6020725 S 782 GTCAAGGCTCCACTGGGCTCCTGCCATACTCCAGGCCTATTGTCACTGTG X + 69376459-69376508 Xq13.1b Homo sapiens diacylglycerol O-acyltransferase 2-like 3 (DGAT2L3), mRNA. The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [evidence IEA]; The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent [goid 8610] [evidence IEA] Catalysis of the generalized reaction: acyl-carrier + reactant = acyl-reactant + carrier [goid 8415] [evidence IEA]; Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2 [goid 16740] [evidence IEA]; Catalysis of the reaction: a long-chain-alcohol + acyl-CoA = a long-chain ester + CoA [goid 47196] [evidence IEA] DGA2; AWAT1 AWAT1; DGA2 NM_001013579.1
ILMN_1793729 Homo sapiens RefSeq ILMN_18382 ILMN_18382 C15ORF39 NM_015492.4 NM_015492.4 56905 153251858 NM_015492.4 C15orf39 NP_056307.2 ILMN_1793729 870110 S 3585 CTTGCCTAGAGAACACACATGGGCTTTGGAGCCCGACAGACCTGGGCTTG 15 + 73290721-73290770 15q24.2a Homo sapiens chromosome 15 open reading frame 39 (C15orf39), mRNA. DKFZP434H132; FLJ46337; MGC117209 DKFZP434H132; FLJ46337; MGC117209 NM_015492.4
ILMN_2296644 Homo sapiens RefSeq ILMN_22537 ILMN_22537 PCDHGA9 NM_018921.2 NM_018921.2 56107 14270485 NM_018921.2 PCDHGA9 NP_061744.1 ILMN_2296644 7510243 I 2759 ATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAACATGGAGGC 5 + 140870884-140870924:140870925-140870933 5q31.3c Homo sapiens protocadherin gamma subfamily A, 9 (PCDHGA9), transcript variant 1, mRNA. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA] Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA] PCDH-GAMMA-A9 PCDH-GAMMA-A9 NM_018921.2
ILMN_1711283 Homo sapiens RefSeq ILMN_12044 ILMN_22537 PCDHGA9 NM_018921.2 NM_018921.2 56107 14270485 NM_018921.2 PCDHGA9 NP_061744.1 ILMN_1711283 4180259 A 2220 TGTGGGTGTAGATGGGGTTCGAGCTTTCCTACAGACCTATTCTCAGGAGT 5 + 140764923-140764972 5q31.3c Homo sapiens protocadherin gamma subfamily A, 9 (PCDHGA9), transcript variant 1, mRNA. The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules [goid 7155] [evidence IEA]; The attachment of an adhesion molecule in one cell to an identical molecule in an adjacent cell [goid 7156] [evidence IEA] Interacting selectively with calcium ions (Ca2+) [goid 5509] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA] PCDH-GAMMA-A9 PCDH-GAMMA-A9 NM_018921.2
ILMN_1682799 Homo sapiens RefSeq ILMN_1387 ILMN_1387 STAMBPL1 NM_020799.2 NM_020799.2 57559 52694663 NM_020799.2 STAMBPL1 NP_065850.1 ILMN_1682799 7150059 S 1746 TGTAAGCACCGTCAACATCAGACACCTACTCATGGACATGTGGTTGCCGG 10 + 90672973-90673022 10q23.31b Homo sapiens STAM binding protein-like 1 (STAMBPL1), mRNA. The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA] Catalysis of the reaction: ubiquitin C-terminal thiolester + H2O = ubiquitin + a thiol. Hydrolysis of esters, including those formed between thiols such as dithiothreitol or glutathione and the C-terminal glycine residue of the polypeptide ubiquitin, and AMP-ubiquitin [goid 4221] [evidence IEA]; Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid [goid 8233] [evidence IEA]; Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions [goid 8237] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA] KIAA1373; bA399O19.2; FLJ31524; AMSH-LP; AMSH-FP; ALMalpha bA399O19.2; AMSH-LP; ALMalpha; KIAA1373; FLJ31524; AMSH-FP NM_020799.2
ILMN_1665311 Homo sapiens RefSeq ILMN_1785 ILMN_1785 STH NM_001007532.1 NM_001007532.1 246744 56090268 NM_001007532.1 STH NP_001007533.1 ILMN_1665311 5340180 S 97 CAGCCTCTGTGTGAGTGGATGATTCAGGTTGCCAGAGACAGAACCCTCAG 17 + 41432579-41432628 17q21.31e Homo sapiens saitohin (STH), mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA] MGC163193; MGC163191 MGC163193; MGC163191 NM_001007532.1
ILMN_1679194 Homo sapiens RefSeq ILMN_138375 ILMN_179411 UGT2B7 XM_001128725.1 XM_001128725.1 7364 113416110 XM_001128725.1 UGT2B7 XP_001128725.1 ILMN_1679194 1190064 A 1441 TAAACACCTTCGGGTTGCAGCCCACGACCTCACCTGGTTCCAGTACCACT 4q13.2c PREDICTED: Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B7 (UGT2B7), mRNA. That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 2159463] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [pmid 2159463] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA] Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA] XM_001128725.1
ILMN_1755897 Homo sapiens RefSeq ILMN_22479 ILMN_179411 UGT2B7 XM_001128725.1 XM_001128725.1 7364 113416110 XM_001128725.1 UGT2B7 XP_001128725.1 ILMN_1755897 5420450 A 1437 GAGCTAAACACCTTCGGGTTGCAGCCCACGACCTCACCTGGTTCCAGTAC 4q13.2c PREDICTED: Homo sapiens UDP glucuronosyltransferase 2 family, polypeptide B7 (UGT2B7), mRNA. That fraction of cells, prepared by disruptive biochemical methods, that includes the plasma and other membranes [goid 5624] [pmid 2159463] [evidence TAS]; The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached) [goid 5783] [evidence IEA]; The lipid bilayer surrounding the endoplasmic reticulum [goid 5789] [evidence IEA]; Any of the small, heterogeneous, artifactual, vesicular particles, 50-150 nm in diameter, that are formed when some eukaryotic cells are homogenized and that sediment on centrifugation at 100000 g [goid 5792] [evidence IEA]; Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids [goid 6629] [pmid 2159463] [evidence TAS]; The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation [goid 8152] [evidence IEA] Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside [goid 15020] [evidence IEA] XM_001128725.1
ILMN_1784717 Homo sapiens RefSeq ILMN_30266 ILMN_30266 RPS19 NM_001022.3 NM_001022.3 6223 48255921 NM_001022.3 RPS19 NP_001013.1 ILMN_1784717 1470086 S 739 CTGACACCTCAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTGGC 19 + 47065619-47065663:47067259-47067263 19q13.2c Homo sapiens ribosomal protein S19 (RPS19), mRNA. The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA]; A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome [goid 5730] [pmid 16289379] [evidence IDA]; That part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 5829] [pmid 12588972] [evidence EXP]; An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins [goid 5840] [evidence IEA]; The small subunit of the ribosome that is found in the cytosol of the cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components [goid 22627] [pmid 15883184] [evidence IDA] The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis [goid 6414] [pmid 15189156] [evidence EXP]; A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus [goid 9991] [pmid 16289379] [evidence TAS]; The directed movement of substances that are gaseous in normal living conditions into, out of, within or between cells [goid 15669] [pmid 9988267] [evidence IMP]; The process by which a myeloid precursor cell acquires specializes features of an erythrocyte [goid 30218] [pmid 16289379] [evidence IMP]; The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome [goid 48856] [pmid 9988267] [evidence IMP]; Any process that activates or increases the frequency, rate or extent of the movement of a cell [goid 51272] [pmid 16289379] [evidence TAS] Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [pmid 9988267] [evidence TAS]; The action of a molecule that contributes to the structural integrity of the ribosome [goid 3735] [pmid 15883184] [evidence IDA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 17353931] [evidence IPI] DBA DBA NM_001022.3
ILMN_1667120 Homo sapiens RefSeq ILMN_4500 ILMN_4500 FBXO9 NM_012347.4 NM_012347.4 26268 117190362 NM_012347.4 FBXO9 NP_036479.1 ILMN_1667120 3610056 I 33 GGGCAACTGGTGTGTTTATATGCCTGACATTATTTGGGTTTTCCCCCCTC 6 + 53043762-53043780:53043781-53043811 6p12.1d Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA. A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [pmid 10531037] [evidence NAS]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [pmid 10531035] [evidence NAS] The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [pmid 10531035] [evidence NAS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [pmid 10531037] [evidence NAS] Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [pmid 10531035] [evidence NAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [pmid 10531037] [evidence NAS] dJ341E18.2; KIAA0936; FBX9; VCIA1; DKFZp434C0118; NY-REN-57 dJ341E18.2; DKFZp434C0118; NY-REN-57; KIAA0936; FBX9; VCIA1 NM_012347.4
ILMN_1702928 Homo sapiens RefSeq ILMN_4617 ILMN_4500 FBXO9 NM_012347.4 NM_012347.4 26268 117190362 NM_012347.4 FBXO9 NP_036479.1 ILMN_1702928 6980577 A 2992 AGGTGAAATGTGCATACAGAAGGAAGAGAGTTGGCCAGGTGTGGTGACTC 6 + 53072185-53072234 6p12.1d Homo sapiens F-box protein 9 (FBXO9), transcript variant 1, mRNA. A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [pmid 10531037] [evidence NAS]; A protein complex that includes a ubiquitin-protein ligase (E3) and other proteins that may confer substrate specificity on the complex [goid 151] [pmid 10531035] [evidence NAS] The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein [goid 6511] [evidence IEA]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [pmid 10531035] [evidence NAS]; The process by which one or more ubiquitin moieties are added to a protein [goid 16567] [pmid 10531037] [evidence NAS] Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [pmid 10531035] [evidence NAS]; Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine [goid 4842] [pmid 10531037] [evidence NAS] dJ341E18.2; KIAA0936; FBX9; VCIA1; DKFZp434C0118; NY-REN-57 dJ341E18.2; DKFZp434C0118; NY-REN-57; KIAA0936; FBX9; VCIA1 NM_012347.4
ILMN_2121316 Homo sapiens RefSeq ILMN_18324 ILMN_18324 SCYL1BP1 NM_152281.1 NM_152281.1 92344 22748638 NM_152281.1 SCYL1BP1 NP_689494.1 ILMN_2121316 1400546 S 1757 CCAAACAACTTAAACCAGCATCACTTTTGTCTTCAATTTGCCTTCCAGTG 1 + 168788779-168788828 1q24.2c Homo sapiens SCY1-like 1 binding protein 1 (SCYL1BP1), mRNA. All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence ISS] Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence IEA]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [evidence ISS] NTKL-BP1; MGC70512; MGC51263; NTKLBP1; RP11-545I10.1; FLJ11752 NTKL-BP1; MGC51263; NTKLBP1; FLJ11752; MGC70512; RP11-545I10.1 NM_152281.1
ILMN_1807467 Homo sapiens RefSeq ILMN_35121 ILMN_45042 RGNEF XM_932949.2 XM_932949.2 64283 113416641 XM_932949.2 RGNEF XP_938042.2 ILMN_1807467 4230026 A 1603 GTTCTAGCCTTGATGCCTTGGACGCCGACAGTGAAGGGGAAGGGCATTCT 5 + 73172341-73172341:73177849-73177897 5q13.2c PREDICTED: Homo sapiens Rho-guanine nucleotide exchange factor, transcript variant 2 (RGNEF), mRNA. The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA] A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA] Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA] XM_932949.2
ILMN_1652609 Homo sapiens RefSeq ILMN_31495 ILMN_45042 RGNEF XM_932949.2 XM_932949.2 64283 113416641 XM_932949.2 RGNEF XP_938042.2 ILMN_1652609 650102 A 4208 CGCCTTGACCATTCAGGACAGCCACATTGAGATCCACAGGCTGGTTCTCC 5 + 73240995-73241044 5q13.2c PREDICTED: Homo sapiens Rho-guanine nucleotide exchange factor, transcript variant 2 (RGNEF), mRNA. The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA]; All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures [goid 5737] [evidence IEA]; The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins [goid 5886] [evidence IEA]; The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm [goid 5622] [evidence IEA] A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate [goid 30154] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA]; A series of reactions within the cell that occur as a result of a single trigger reaction or compound [goid 7242] [evidence IEA]; Any process that modulates the frequency, rate or extent of Rho protein signal transduction [goid 35023] [evidence IEA] Interacting selectively with an RNA molecule or a portion thereof [goid 3723] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5085] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA]; Interacting selectively with zinc (Zn) ions [goid 8270] [evidence IEA]; Interacting selectively with diacylglycerol, a diester of glycerol and two fatty acids [goid 19992] [evidence IEA]; Interacting selectively with any metal ion [goid 46872] [evidence IEA]; Stimulates the exchange of guanyl nucleotides by a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase [goid 5089] [evidence IEA] XM_932949.2
ILMN_1815346 Homo sapiens RefSeq ILMN_16309 ILMN_16309 TMEM136 NM_174926.1 NM_174926.1 219902 28376667 NM_174926.1 TMEM136 NP_777586.1 ILMN_1815346 1110228 S 694 CCATGCTTGGAGAAGCAGGCGGAGTGAGGAACGGCAGCTGAAACACAACG 11 + 119706365-119706414 11q23.3g Homo sapiens transmembrane protein 136 (TMEM136), mRNA. Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins [goid 16020] [evidence IEA]; Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane [goid 16021] [evidence IEA] MGC17839 MGC17839 NM_174926.1
ILMN_1751984 Homo sapiens RefSeq ILMN_3497 ILMN_3497 PRKAG1 NM_002733.3 NM_002733.3 5571 47132573 NM_002733.3 PRKAG1 NP_002724.1 ILMN_1751984 6860092 A 1283 GCCTAGCCAGTTCTAGCCCCTGTCCTCTTAGATATATCCCCCTTTCTGGG 12 - 47682681-47682730 12q13.12a Homo sapiens protein kinase, AMP-activated, gamma 1 non-catalytic subunit (PRKAG1), transcript variant 1, mRNA. A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent [goid 5634] [evidence IEA] The process of introducing a phosphate group on to a protein [goid 6468] [pmid 2342480] [evidence TAS]; The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes [goid 6633] [evidence IEA]; The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell [goid 7165] [pmid 2342480] [evidence TAS]; The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis [goid 7283] [pmid 9598317] [evidence TAS] Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein; dependent on the presence of cAMP [goid 4691] [pmid 9598317] [evidence TAS]; Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 18403135] [evidence IPI] AMPKG; MGC8666 AMPKG; MGC8666 NM_002733.3
ILMN_2402936 Homo sapiens RefSeq ILMN_19720 ILMN_19720 LOC440926 NR_002315.1 NR_002315.1 440926 66472905 NR_002315.1 LOC440926 ILMN_2402936 2360136 A 671 AGAAATCAGGTATTGGCAGTTTTTCCATTTTCATTTGTGTGTGAATTTTT 2 + 175293444-175293493 2q31.1g Homo sapiens H3 histone, family 3A pseudogene (LOC440926), non-coding RNA. NR_002315.1
ILMN_2385662 Homo sapiens RefSeq ILMN_12093 ILMN_12093 C1ORF103 NM_001006945.1 NM_001006945.1 55791 55743125 NM_001006945.1 C1orf103 NP_001006946.1 ILMN_2385662 2100176 A 981 GCTGAGAGAGAAAGAAGCAGCTCTTGAAGAAATGCGTAAGAAGATGCACC 1 - 111292111-111292160 1p13.3a Homo sapiens chromosome 1 open reading frame 103 (C1orf103), transcript variant 2, mRNA. Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) [goid 5515] [pmid 15383276] [evidence IPI] RP11-96K19.1; RIF1; FLJ11269 RIF1; FLJ11269; RP11-96K19.1 NM_001006945.1

Total number of rows: 24526

Table truncated, full table size 54370 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8432_HUMANREF-8_V3_0_R1_11282963_A_WGDASL.txt.gz 9.7 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap