|
Status |
Public on Jan 22, 2013 |
Title |
lc_117 |
Sample type |
RNA |
|
|
Source name |
liver cirrhosis
|
Organism |
Homo sapiens |
Characteristics |
tissue: liver biopsy specimen prediction: Poor prognosis prediction confidence p-value: 0.062 prediction (p<0.05): Intermediate prognosis presence of varices: 0 bilirubin ≥ 1.0mg/dl: 0 platelet < 100,000/mm3: 0 days to death: 7027 death: 1 days to decomp: 4410 decomp: 1 days to child: 7027 child: 1 days to hcc: 7027 hcc: 0
|
Extracted molecule |
total RNA |
Extraction protocol |
Using 10µm sections taken from formalin-fixed paraffin-embeded tissue blocks, total RNA was extracted using TRIzol LS (Invitrogen).
|
Label |
Cy5
|
Label protocol |
Refer to the Illumina whole-genome DASL Assay System Manual
|
|
|
Hybridization protocol |
Refer to the Illumina whole-genome DASL Assay System Manual.
|
Scan protocol |
Refer to the Illumina whole-genome DASL Assay System Manual.
|
Description |
lc_117
|
Data processing |
For each probe, replicate mesurements were averaged after removing outliers. Data were were then normalized using the cubic spline algorithm.
|
|
|
Submission date |
Apr 13, 2009 |
Last update date |
Nov 04, 2016 |
Contact name |
Yujin Hoshida |
E-mail(s) |
Yujin.Hoshida@UTSouthwestern.edu
|
Organization name |
University of Texas Southwestern Medical Center
|
Street address |
5323 Harry Hines Blvd
|
City |
Dallas |
State/province |
TX |
ZIP/Postal code |
75390 |
Country |
USA |
|
|
Platform ID |
GPL8432 |
Series (1) |
GSE15654 |
Gene-expression profiles of hepatitis C-related, early-stage liver cirrhosis |
|