|
| Status |
Public on Jan 22, 2013 |
| Title |
lc_154 |
| Sample type |
RNA |
| |
|
| Source name |
liver cirrhosis
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: liver biopsy specimen
prediction: Poor prognosis
prediction confidence p-value: 0.005
prediction (p<0.05): Poor prognosis
presence of varices: 0
bilirubin ≥ 1.0mg/dl: 0
platelet < 100,000/mm3: 0
days to death: 2976
death: 0
days to decomp: 2976
decomp: 0
days to child: 2976
child: 0
days to hcc: 2976
hcc: 0
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Using 10µm sections taken from formalin-fixed paraffin-embeded tissue blocks, total RNA was extracted using TRIzol LS (Invitrogen).
|
| Label |
Cy5
|
| Label protocol |
Refer to the Illumina whole-genome DASL Assay System Manual
|
| |
|
| Hybridization protocol |
Refer to the Illumina whole-genome DASL Assay System Manual.
|
| Scan protocol |
Refer to the Illumina whole-genome DASL Assay System Manual.
|
| Description |
lc_154
|
| Data processing |
For each probe, replicate mesurements were averaged after removing outliers. Data were were then normalized using the cubic spline algorithm.
|
| |
|
| Submission date |
Apr 13, 2009 |
| Last update date |
Nov 04, 2016 |
| Contact name |
Yujin Hoshida |
| E-mail(s) |
Yujin.Hoshida@UTSouthwestern.edu
|
| Organization name |
University of Texas Southwestern Medical Center
|
| Street address |
5323 Harry Hines Blvd
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75390 |
| Country |
USA |
| |
|
| Platform ID |
GPL8432 |
| Series (1) |
| GSE15654 |
Gene-expression profiles of hepatitis C-related, early-stage liver cirrhosis |
|
