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Series GSE167135 Query DataSets for GSE167135
Status Public on Apr 05, 2021
Title Single-Cell Resolution of Lineage Trajectories in the Arabidopsis Stomatal Lineage and Developing Leaf
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Dynamic cell identities underlie flexible developmental programs. The stomatal lineages in the Arabidopsis leaf epidermis feature asynchronous and indeterminate divisions that can be modulated by environmental cues. The products of these lineages, stomatal guard cells and pavement cells, regulate plant-atmosphere exchanges, and the epidermis as a whole influences overall leaf growth. How flexibility is encoded in development of the stomatal lineage, and how cell fates are coordinated in the leaf are open questions. Here, we offer single-cell transcriptomes to uncover models of cell differentiation within Arabidopsis leaf tissue.
Overall design Included are raw and processed single-cell (sc)RNA-seq datasets that profile cells of the Arabidopsis stomatal lineage and developing leaf. The overall design and methods used are described in the associated manuscript.
Contributor(s) Lopez-Anido CB, Bergmann DC
Citation(s) 33823130
Submission date Feb 19, 2021
Last update date Apr 09, 2021
Contact name Dominique Bergmann
Organization name Stanford University
Street address 371 Jane Stanford Way
City Stanford
State/province CA
ZIP/Postal code 94305-5020
Country USA
Platforms (2)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
GPL21785 Illumina HiSeq 4000 (Arabidopsis thaliana)
Samples (625)
GSM5097267 ATML1p Smart-seq2 Pool 1 Cell 1
GSM5097268 ATML1p Smart-seq2 Pool 1 Cell 2
GSM5097269 ATML1p Smart-seq2 Pool 1 Cell 3
BioProject PRJNA703045
SRA SRP307169

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE167135_ATML1p_Smartseq2_TPM.csv.gz 3.1 Mb (ftp)(http) CSV
GSE167135_RAW.tar 693.6 Mb (http)(custom) TAR (of TAR)
GSE167135_Smartseq2_FACSmetadata.csv.gz 29.4 Kb (ftp)(http) CSV
GSE167135_TMMp_Smartseq2_TPM.csv.gz 9.3 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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