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GEO accession:
Series GSE107612
Query DataSets for GSE107612
Status
Public on Sep 27, 2018
Title
Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://www.cell.com/cell-reports/fulltext/S2211-1247(18)31338-X
Citation(s)
30232013
Submission date
Dec 01, 2017
Last update date
May 15, 2019
Contact name
Uta Maria Bauer
E-mail(s)
bauer@imt.uni-marburg.de
Organization name
Philipps University Marburg
Department
Institute of Molecular Biology and Tumor Research
Lab
AG Bauer
Street address
Hans-Meerwein-Str. 2
City
Marburg
State/province
Hessen
ZIP/Postal code
35043
Country
Germany
Platforms (1)
GPL18460
Illumina HiSeq 1500 (Homo sapiens)
Samples (59)
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GSM2872471
H3R2me2a_KO-1_-RA
GSM2872472
H3K27ac_CT_-RA
GSM2872473
H3K27ac_CT_+RA
GSM2872474
H3K27ac_KO-2_-RA
GSM2872475
H3K27ac_KO-2_+RA
GSM2872476
H3K4me1_CT_-RA
GSM2872477
H3K4me1_CT_+RA
GSM2872478
H3K4me1_KO-2_-RA
GSM2872479
H3K4me1_KO-2_+RA
GSM2872480
H3K4me3_CT_-RA
GSM2872481
H3K4me3_CT_+RA
GSM2872482
H3K4me3_KO-2_-RA
GSM2872483
H3K4me3_KO-2_+RA
GSM2872484
H3R2me2a_CT_+RA
GSM2872485
H3R2me2a_CT_-RA
GSM2872486
H3R2me2a_KO-2_+RA
GSM2872487
H3R2me2a_KO-2_-RA
GSM2872488
IgG_CT_-RA
GSM2872489
IgG_CT_+RA
GSM2872490
IgG_KO-1_-RA
GSM2872491
IgG_KO-2_-RA
GSM2872492
IgG_KO-2_+RA
GSM2872554
NT2D1_PRMT6_CT_-RA_rep1
GSM2872555
NT2D1_PRMT6_CT_-RA_rep2
GSM2872556
NT2D1_PRMT6_CT_-RA_rep3
GSM2872557
NT2D1_PRMT6_KO-2_-RA_rep1
GSM2872558
NT2D1_PRMT6_KO-2_-RA_rep2
GSM2872559
NT2D1_PRMT6_KO-2_-RA_rep3
GSM2872560
NT2D1_PRMT6_CT_+RA_rep1
GSM2872561
NT2D1_PRMT6_CT_+RA_rep2
GSM2872562
NT2D1_PRMT6_CT_+RA_rep3
GSM2872563
NT2D1_PRMT6_KO-2_+RA_rep1
GSM2872564
NT2D1_PRMT6_KO-2_+RA_rep2
GSM2872565
NT2D1_PRMT6_KO-2_+RA_rep3
GSM3273407
U2OS_IgG
GSM3273408
U2OS_KO_H3R2me2a
GSM3273409
U2OS_CT_H3R2me2a
GSM3273410
NT2D1_KO_KMT2D_+RA_santacruz
GSM3273411
NT2D1_CT_KMT2D_+RA_abgent
GSM3273412
NT2D1_KO_H3R2me2a_-Doxy_R1
GSM3273413
NT2D1_CT_H3R2me2a_-RA_R2 | NT2D1_CT_H3R2me2a_-Inh_R2
GSM3273414
NT2D1_CT_H3R2me2a_-Inh_R1
GSM3273415
NT2D1_KO_H3R2me2a_+Doxy_R2
GSM3273416
NT2D1_KO_KMT2D_+RA_abgent
GSM3273417
NT2D1_CT_KMT2D_+RA_santacruz
GSM3273418
NT2D1_CT_H3R2me2a_+Inh_R1
GSM3273419
NT2D1_KO_Input_+Doxy
GSM3273420
NT2D1_KO_KMT2D_-RA_abgent
GSM3273421
NT2D1_CT_H3R2me2a_+Inh_R2
GSM3273422
NT2D1_KO_H3R2me2a_+Doxy_R1
GSM3273423
NT2D1_KO_Input_-Doxy
GSM3273424
NT2D1_CT_KMT2D_-RA_santacruz
GSM3273425
NT2D1_CT_KMT2D_-RA_abgent
GSM3273426
NT2D1_KO_KMT2D_-RA_santacruz
GSM3273427
NT2D1_KO_H3R2me2a_-Doxy_R2
GSM3291465
NT2D1_CT_H3K27me3_-RA
GSM3291466
NT2D1_KO_H3K27me3_-RA
GSM3291467
NT2D1_CT_H3K27me3_+RA
GSM3291468
NT2D1_KO_H3K27me3_+RA
This SuperSeries is composed of the following SubSeries:
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GSE107609
Genomic occurrence analysis of PRMT6-dependent H3R2me2a
GSE107611
Transcriptome analysis of PRMT6 knock-out in NT2/D1 cells
GSE117200
Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes [ChIP-seq]
GSE117341
Repressive mark H3K27me3 in PRMT6 KO NT2/D1 cells
Relations
BioProject
PRJNA420761
Download family
Format
SOFT formatted family file(s)
SOFT
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE107612_RAW.tar
6.3 Gb
(http)
(custom)
TAR (of BW, TXT)
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