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Series GSE107611 Query DataSets for GSE107611
Status Public on Sep 27, 2018
Title Transcriptome analysis of PRMT6 knock-out in NT2/D1 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Whole transcriptome for PRMT6 knock-out and control NT2/D1 cells with and without ATRA (all-trans retinoic acid) was sequenced. These samples were compared to each other to find differentially regulated genes and PRMT6-dependent transcriptome in pluripotency and differentiating cells.
Overall design Examining of PRMT6-dependent transcriptome in NT2/D1 cells using RNAseq.
Contributor(s) Bouchard C, Sahu P, Nötzold RR, Bauer UM
Citation(s) 30232013
Submission date Dec 01, 2017
Last update date May 15, 2019
Contact name Uta Maria Bauer
Organization name Philipps University Marburg
Department Institute of Molecular Biology and Tumor Research
Lab AG Bauer
Street address Hans-Meerwein-Str. 2
City Marburg
State/province Hessen
ZIP/Postal code 35043
Country Germany
Platforms (1)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
Samples (12)
GSM2872554 NT2D1_PRMT6_CT_-RA_rep1
GSM2872555 NT2D1_PRMT6_CT_-RA_rep2
GSM2872556 NT2D1_PRMT6_CT_-RA_rep3
This SubSeries is part of SuperSeries:
GSE107612 Genomic location of PRMT6-dependent H3R2 methylation is decisive for the transcriptional outcome of associated genes
BioProject PRJNA420764
SRA SRP125977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107611_PRMT6_CT_KO+-ATRA_raw_tagcounts.txt.gz 927.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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