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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 06, 2007 |
| Title |
[Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Mus musculus |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
The GeneChip® Mouse Promoter 1.0R Array is designed for chromatin immunoprecipitation (ChIP) experiments. The Mouse Promoter 1.0R Array is a single array comprised of over 4.6 million probes tiled to interrogate over 28,000 mouse promoter regions. Sequences used in the design of the Mouse Promoter 1.0R Array were selected from NCBI mouse genome assembly (version 33). Repetitive elements were removed by RepeatMasker. Promoter regions were selected using sequence information from:
33,559 ENSEMBL genes (version 30_33f March 23, 2005)
18,167 RefSeq mRNAs (NCBI GenBank® April 7, 2005)
27,707 complete-CDS mRNAs (NCBI GenBank® April 7, 2005)
The sequences selected for the Mouse Promoter 1.0R Array are a subset of the content used in the whole-genome ChIP array set, the Mouse Tiling 2.0R Array Set.
Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 base pairs between probes. Each promoter region covers approximately 6 kb upstream through 2.5 kb downstream of 5' transcription start sites.
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/support/technical/byproduct.affx?product=mupromoter
http://www.affymetrix.com/support/technical/libraryfileupdatesmain.affx
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| Submission date |
Sep 06, 2007 |
| Last update date |
Oct 14, 2014 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (469)
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GSM228764, GSM279656, GSM279657, GSM279658, GSM279659, GSM279660
GSM279661, GSM279662, GSM279663, GSM286118, GSM286119, GSM286120, GSM286121, GSM286122, GSM286123, GSM286124, GSM286125, GSM286126, GSM286127, GSM286128, GSM286129, GSM286130, GSM286131, GSM291520, GSM291521, GSM299302, GSM299303, GSM299304, GSM299305, GSM299306, GSM299307, GSM299308, GSM299309, GSM299310, GSM299311, GSM299312, GSM299313, GSM299314, GSM299315, GSM299316, GSM299317, GSM308532, GSM308533, GSM310416, GSM310417, GSM310418, GSM335206, GSM335207, GSM335208, GSM335209, GSM335210, GSM335211, GSM335212, GSM335213, GSM335214, GSM365614, GSM370899, GSM370900, GSM370901, GSM370902, GSM370903, GSM370904, GSM422292, GSM422293, GSM441165, GSM441166, GSM444364, GSM444365, GSM444366, GSM461461, GSM461462, GSM461463, GSM461464, GSM461465, GSM470843, GSM470844, GSM470845, GSM475252, GSM475253, GSM475254, GSM475255, GSM475256, GSM475257, GSM475258, GSM475259, GSM475260, GSM475261, GSM475262, GSM475263, GSM475264, GSM480101, GSM480102, GSM480103, GSM480104, GSM480105, GSM491751, GSM491752, GSM491753, GSM491754, GSM491755, GSM491756, GSM499628, GSM499629, GSM499630, GSM516404, GSM516405, GSM516406, GSM516407, GSM516408, GSM516409, GSM516410, GSM526868, GSM526869, GSM526870, GSM526871, GSM548851, GSM548852, GSM548853, GSM548854, GSM548855, GSM548856, GSM548857, GSM548858, GSM548859, GSM548860, GSM548861, GSM548862, GSM548863, GSM548864, GSM578132, GSM580423, GSM580424, GSM580425, GSM580426, GSM580427, GSM627507, GSM627508, GSM627509, GSM646739, GSM646740, GSM720070, GSM720071, GSM795412, GSM795413, GSM795414, GSM795415, GSM795416, GSM795417, GSM795418, GSM795419, GSM795420, GSM795421, GSM795422, GSM795423, GSM795424, GSM795425, GSM795426, GSM795427, GSM795428, GSM795429, GSM795430, GSM795431, GSM795432, GSM795433, GSM795434, GSM795435, GSM795436, GSM795437, GSM795438, GSM795439, GSM795440, GSM795441, GSM795442, GSM795443, GSM795444, GSM795445, GSM795446, GSM795447, GSM825338, GSM825339, GSM970578, GSM984664, GSM984665, GSM992682, GSM992683, GSM992684, GSM992685, GSM992686, GSM1050553, GSM1050554, GSM1050555, GSM1050556, GSM1050557, GSM1062881, GSM1062882, GSM1062883, GSM1062884, GSM1062885, GSM1062886, GSM1062887, GSM1062888, GSM1062889, GSM1062890, GSM1062891, GSM1062892, GSM1062893, GSM1062894, GSM1062895, GSM1062896, GSM1062897, GSM1062898, GSM1062899, GSM1062900, GSM1093630, GSM1093631, GSM1093632, GSM1093633, GSM1093634, GSM1093636, GSM1093638, GSM1093639, GSM1099703, GSM1099704, GSM1099705, GSM1099706, GSM1099707, GSM1099708, GSM1099709, GSM1099710, GSM1099711, GSM1099712, GSM1099713, GSM1099714, GSM1099715, GSM1099716, GSM1099717, GSM1099718, GSM1099719, GSM1099720, GSM1099721, GSM1099722, GSM1099723, GSM1206952, GSM1206953, GSM1206954, GSM1206955, GSM1206956, GSM1206957, GSM1206958, GSM1206959, GSM1206960, GSM1206961, GSM1206962, GSM1206963, GSM1206964, GSM1206965, GSM1206966, GSM1206967, GSM1206968, GSM1206969, GSM1206970, GSM1206971, GSM1206972, GSM1206973, GSM1206974, GSM1206975, GSM1206976, GSM1206977, GSM1206978, GSM1206979, GSM1206980, GSM1206981, GSM1206982, GSM1206983, GSM1206984, GSM1206985, GSM1206986, GSM1206987, GSM1206988, GSM1206989, GSM1206990, GSM1206991, GSM1206992, GSM1206993, GSM1206994, GSM1206995, GSM1206996, GSM1206997, GSM1206998, GSM1206999, GSM1249909, GSM1249910, GSM1249911, GSM1249912, GSM1249913, GSM1249914, GSM1249915, GSM1249916, GSM1249917, GSM1249918, GSM1249919, GSM1249920, GSM1249921, GSM1249922, GSM1249923, GSM1249924, GSM1249925, GSM1249926, GSM1249927, GSM1249928, GSM1249929, GSM1249930, GSM1328466, GSM1328467, GSM1358290, GSM1358291, GSM1358292, GSM1358293, GSM1358294, GSM1358295, GSM1358296, GSM1358297, GSM1358298, GSM1358299, GSM1358300, GSM1358301, GSM1358302, GSM1358303, GSM1358304, GSM1358305, GSM1358306, GSM1358307, GSM1358308, GSM1358309, GSM1358310, GSM1358311, GSM1358312, GSM1358313, GSM1358314, GSM1358315, GSM1358316, GSM1358317, GSM1358318, GSM1358319, GSM1358320, GSM1358321, GSM1358322, GSM1358323, GSM1358324, GSM1358325, GSM1358326, GSM1358327, GSM1358328, GSM1358329, GSM1358330, GSM1358331, GSM1358332, GSM1358333, GSM1496151, GSM1496152, GSM1496153, GSM1496154, GSM1496155, GSM1496156, GSM1543873, GSM1543874, GSM1543875, GSM1543876, GSM1543877, GSM1543878, GSM1543879, GSM1543880, GSM1543881, GSM1543882, GSM1543883, GSM1543884, GSM1543885, GSM1543886, GSM1543887, GSM1543888, GSM1826982, GSM1826983, GSM1832319, GSM1832320, GSM1985660, GSM1985661, GSM1985662, GSM1985663, GSM1985664, GSM1985665, GSM1985666, GSM1985667, GSM1985668, GSM1985669, GSM1985670, GSM1985671, GSM1985672, GSM1985673, GSM1985674, GSM1985675, GSM2029126, GSM2029127, GSM2029128, GSM2029129, GSM2029130, GSM2029131, GSM2084911, GSM2084912, GSM2107215, GSM2107216, GSM2107217, GSM2107218, GSM2107219, GSM2107220, GSM2107221, GSM2107222, GSM2107223, GSM2107224, GSM2107225, GSM2691071, GSM2691072, GSM2691073, GSM2691074, GSM2691075, GSM2691076, GSM2691077, GSM2691078, GSM2691079, GSM2691080, GSM2691081, GSM2691082, GSM3417412, GSM3417413, GSM3417414, GSM3417415, GSM3417416, GSM3417417, GSM3417418, GSM3417419, GSM3417420, GSM3417421, GSM3417422, GSM3417423, GSM5219106, GSM5219107, GSM5219108, GSM5219109, GSM5219110, GSM5219111, GSM5219112, GSM5219113, GSM5219114, GSM5219115, GSM5219116, GSM5219117, GSM5219118, GSM5219119, GSM5219120, GSM5219121, GSM5219122, GSM5219123, GSM5219124, GSM5219125, GSM5219126, GSM5219127, GSM5219128, GSM5219129, GSM5219130, GSM5219131
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| Series (67)
|
| GSE9011 |
Genome-wide in vivo binding analysis for PU.1 in RAW264.7 macrophages |
| GSE11062 |
Genome-Wide Gli3 Binding Sites in the E11.5 Mouse Limb Bud |
| GSE11077 |
A Genome-Scale Analysis of the Cis-Regulatory Circuitry Underlying Hedgehog Mediated Patterning of the Mammalian Limb |
| GSE11329 |
Chip-chip from mouse embryonic stem (mES) cells |
| GSE11576 |
RNA mapping and ChIP with tiling arrays in FGF-stimulated NIH3T3 cells |
| GSE11850 |
Genome-wide ChIP-chip analysis of the binding targets of the naïve and activated aryl hydrocarbon receptor |
| GSE12283 |
Chip-chip from mouse embryonic stem (mES) cells with bioTrim28, and bioCnot3 |
| GSE12361 |
Genome-wide analysis of H3K79 dimethylation in normal and MLL-AF4 leukemic pre-B cells |
| GSE12362 |
Genome-wide analysis of H3K79 dimethylation in MLL-AF4 leukemic bone marrow |
| GSE12363 |
H3K79 methylation profiles define murine and human MLL-AF4 leukemias |
| GSE13277 |
ChIP-on-chip examination of inducible genes in T cells |
| GSE13279 |
Defining the chromatin signature of inducible genes in T cells |
| GSE14654 |
Ctr9 Promoter Region Binding |
| GSE14812 |
Chromatin immunoprecipitation of C/EBP delta in mouse bone-marrow macrophages stimulated with LPS for 6hr |
| GSE16845 |
STAT4 ChIP-on-chip in IL12-Mediated T Helper 1 Cell Differentiation |
| GSE17682 |
Chromatin localization of Gli1 in granule neuron precursor cells and medulloblastoma |
| GSE17719 |
Gli1 regulatory networks in granule neuron precursor and medulloblastoma cells |
| GSE17807 |
Genome-wide binding of Nkx2-5 |
| GSE18507 |
Transcriptional Networks in Mouse Trophoblast Stem Cell Self-Renewal |
| GSE19026 |
Genome-Wide Sox17 Binding Sites in Mouse Extraembryonic Endoderm and Embryonic Stem Cells |
| GSE19167 |
JMJ and PRC2 ChIP-chip data from mouse embryonic stem cells |
| GSE19169 |
Jumonji modulates Polycomb activity and self-renewal versus differentiation of stem cells |
| GSE19321 |
CCAAT/enhancer-binding protein alpha target genes in myeloid progenitor cells uncovered by chromatin IP |
| GSE19706 |
Retroviral Integration Mutagenesis in Mice and Comparative Analysis in Human AML Identify Reduced PTP4A3 Expression as a Prognostic Indicator |
| GSE19999 |
Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation |
| GSE20551 |
ChIP-chip from mouse embryonic stem (mES) cells |
| GSE21055 |
Differential Role of Sall4 isoforms in ES cell pluripotency: ChIP-chip |
| GSE21056 |
Differential roles of Sall4 isoforms in ES cell pluripotency |
| GSE22077 |
MeDIP-on-chip and Pol-II ChIP-on-chip during C2C12 myogenic and BMP2-induced osteogenic differentiation |
| GSE23567 |
Genome-Wide CRX Binding Sites in adult mouse photoreceptors |
| GSE23658 |
Elevated levels of H3K27me3 in Snf5-deficient cells |
| GSE23659 |
Epigenetic antagonism between Snf5 and Ezh2 during oncogenic transformation and elevated levels of H3K27me3 in Snf5-deficient cells |
| GSE25523 |
Genome-wide Sall1 and Nanog binding sites in mouse embryonic stem cells |
| GSE26087 |
Global analysis reveals HDAC1 occupies active and inactive genes and core transcription factors in embryonic stem cells and trophoblast stem cells |
| GSE29058 |
Novel Targets of the Transcription Factor Sox9 in Neonatal Mouse Limb |
| GSE32080 |
DNA methylation profiling of embryonic stem cell differentiation into the three germ layers [MeDIP analysis] |
| GSE32082 |
DNA methylation profiling of embryonic stem cell differentiation into the three germ layers |
| GSE36268 |
Mutant-CCAAT/enhancer-binding protein alpha target genes in myeloid progenitor cells by chromatin IP |
| GSE39517 |
Genome-wide location analysis of FLAG-H2BE |
| GSE39674 |
The activity-dependent histone variant H2BE modulates the life span of olfactory neurons |
| GSE40072 |
Stemness-related factor Sall4 interacts with transcription factors Oct-3/4 and Sox2 and occupies Oct-Sox elements in mouse embryonic stem cells |
| GSE40390 |
Genome-wide HSF1 binding sites in control and heat shocked spermatocytes and hepatocytes |
| GSE42818 |
Identification of c-Rel and RelA binding regions in stimulated EL4 cells |
| GSE43460 |
Estrogen Induced DNA Methylation Changes in Mouse Hippocampus |
| GSE43462 |
BioTile Identification of Differentially Methylated Regions in Tiling Microarray Data |
| GSE44902 |
NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets |
| GSE45240 |
Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer [Methylation profiling by array] |
| GSE45342 |
Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer |
| GSE49785 |
Broad shifts in gene expression during early postnatal life are associated with shifts in histone methylation patterns |
| GSE51634 |
Prenatal stress-induced programming of genome-wide promoter DNA methylation in 5-Htt deficient mice |
| GSE56254 |
Paternal poly(ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression |
| GSE56281 |
Paternal poly(ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression [Parg(110)_KO_sperm_MNase] |
| GSE56282 |
Paternal poly(ADP-ribose) metabolism modulates retention of inheritable sperm histones and early embryonic gene expression [PJ34_sperm_MNaseb] |
| GSE61070 |
Tumor circulating DNA profiling in xenografted mice exposed to intermittent hypoxia |
| GSE63208 |
Epigenomic profiling in visceral white adipose tissue of offspring of mice exposed to late gestational sleep fragmentation |
| GSE71112 |
ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory (ChIP) |
| GSE71113 |
ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory |
| GSE71311 |
DNA methylation profiling in GC-2 cells following 2×10-5M diethylstilbestrol exposure |
| GSE76388 |
Epigenomic profiling in visceral white adipose tissue (VWAT) of offspring of mice exposed to late gestational intermittemt hypoxia |
| GSE76616 |
Genome-wide analyses in neuronal cells reveal that USF transcription factors regulate lysosomal gene expression [ChIP-chip] |
| GSE76617 |
Genome-wide analyses in neuronal cells reveal that USF transcription factors regulate lysosomal gene expression |
| GSE79075 |
DNA methylation profiling in GC2 cells exposed to bisphenol A |
| GSE79847 |
Hyponutrition during pregnancy after insemination alters the progenies’ behavior and DNA methylation of their brain |
| GSE100677 |
DNA methylation profiling of promoter DNA associated to the T2D. |
| GSE120865 |
DNA methylation profiles of KK.Cg-Ay/J (KKAy) mice and KK-a/a (KKa) mice |
| GSE120866 |
Gene expression and DNA methylation profiles of KK.Cg-Ay/J (KKAy) mice and KK-a/a (KKa) mice |
| GSE171120 |
Promoter-wide profiling of DNA methylation in prefrontal cortex of Camk2-mutPolg mouse. |
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| Supplementary data files not provided |
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