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Series GSE9011 Query DataSets for GSE9011
Status Public on Oct 11, 2007
Title Genome-wide in vivo binding analysis for PU.1 in RAW264.7 macrophages
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary We used Affymetrix Mouse Promoter 1.0R arrays to analyse PU.1-dependent promoters in mouse macrophages
Keywords: PU.1 ChIP versus IgG ChIP, ChIP-Chip
 
Overall design 3 biological replicates of PU.1 and IgG Immunoprecipitation were performed each
 
Contributor(s) Thomas L
Citation(s) 18687062, 20709948
Submission date Sep 11, 2007
Last update date Oct 14, 2014
Contact name Thomas Langmann
E-mail(s) thomas.langmann@klinik.uni-regensburg.de
Phone +49-941-944-5423
Fax +49-941-944-5402
Organization name Institute of Human Genetics
Department University of Regensburg
Street address Franz-Josef-Strauss-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platforms (1)
GPL5811 [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array
Samples (1)
GSM228764 PU.1 ChIP versus IgG ChIP
Relations
BioProject PRJNA102497

Significant promoters RAW264.7 PU.1 vs IgG header descriptions
Nr.
Gene_ID
Gene_ID
Gene_Symbol
Log Ratio

Data table
Nr. Gene_ID Gene_ID Gene_Symbol Log Ratio
1 XM_896247 68364 0610030E20Rik 1.678
2 XR_002369 67674 0610038D11Rik 2.791
3 AK003812 76311 1110019D14Rik 1.841
4 XM_906738 68512 1110019J04Rik 1.634
5 NM_197979 66152 1110020P15Rik 1.424
6 NM_172866 242406 1110029E03Rik 2.214
7 AK004043 68742 1110032O16Rik 2.413
8 NM_027269 109065 1110034A24Rik 1.968
9 AK166513 68684 1110035D15Rik 1.744
10 NM_001081158 74148 1300001I01Rik 2.259
11 NM_028788 74152 1300002K09Rik 1.778
12 XM_986779 68952 1500016O10Rik 1.705
13 AK158384 77661 1520401O13Rik 2.146
14 AK005592 67503 1700001G17Rik 2.17
15 AK005738 74173 1700012B15Rik 2.552
16 AK006012 69427 1700016B15Rik 1.79
17 AK006171 75637 1700020L05Rik 2.066
18 XM_982268 75623 1700029F09Rik 1.9
19 NM_001033148 69479 1700029J07Rik 1.929
20 AK006537 69515 1700030E10Rik 1.631

Total number of rows: 1202

Table truncated, full table size 39 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE9011_RAW.tar 560.0 Mb (http)(custom) TAR (of BAR, BED, CEL, TXT)
Processed data provided as supplementary file
Processed data are available on Series record

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