GEO Accession viewer

GSE126638	Short and long read sequencing of human mammary epithelial MCF10a-Snail-ER cells after Epithelial-to-Mesenchymal Transition initiation
GSE127059	CircRNAs full-length sequencing in the human and mouse brain samples using Oxford Nanopore Technology
GSE127890	Native molecule sequencing by nano-ID reveals synthesis and stability of RNA isoforms
GSE128536	Tumor-associated Reactive Astrocytes Aid the Evolution of Immunosuppressive Environment in Glioblastoma
GSE130011	Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage
GSE132766	A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
GSE132954	Neocortical Slices of Human Tissue
GSE132971	Direct RNA sequencing enables single-nucleotide m6A detection in endogenous transcript isoforms
GSE133361	Determination of isoform-specific RNA structure with nanopore long reads
GSE135580	Protect-seq: Genome-wide profiling of nuclease inaccessible domains reveals physical properties of chromatin
GSE136068	Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19
GSE136651	Repeat-element-aware profiling of plasma cell-free RNA
GSE137807	mTOR- and LARP1-dependent regulation of TOP mRNA poly(A) tail and ribosome loading [LARP1 KD, Torin1]
GSE138421	Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVEXTA_A2018]
GSE138422	Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVTA_A2017]
GSE138423	Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [HIVTCD4_A2018]
GSE138424	Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing [KHI-1_A2019]
GSE138425	Analysis of HIV-1 transcriptome in different cell models with nanopore sequencing
GSE140734	Nanopore sequencing reveals isoform-specific alterations in human bronchial epithelial cells with U2AF1 S34F mutations
GSE141083	RNA LEVER mediates long-range regulation of ε-globin by keeping PRC2 in check
GSE141693	isoCirc catalogs full-length circular RNA isoforms in human transcriptomes
GSE144979	Alt-RPL36 downregulates the PI3K-AKT-mTOR signaling pathway by interacting with TMEM24
GSE145744	mTOR- and LARP1-dependent regulation of TOP mRNA poly(A) tail and ribosome loading [polysome fractionation]
GSE147118	A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
GSE149117	Pore-C: Combination of chromatin capture assay and Oxford Nanopore Technology long read sequencing.
GSE149204	Alternative cleavage and polyadenylation generates downstream uncapped RNA isoforms with translation potential
GSE150238	An allosteric/intrinsic mechanism supports termination of snRNA transcription.
GSE151549	Driving Intracellular Metal Ions of Human Induced Pluripotent Stem Cells with Intense Terahertz Pulses
GSE154079	Revealing nascent RNA processing dynamics with nano-COP
GSE155708	Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [NP]
GSE155729	Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes
GSE158224	Nanopore DNA sequencing of a human liver progenitor-like cell line
GSE158964	A BRD4-mediated elongation control point primes transcribing RNA polymerase II for 3'-processing and termination [nascONT-seq]
GSE158966	A BRD4-mediated elongation control point primes transcribing RNA polymerase II for 3'-processing and termination
GSE159092	The consequences of RPB1-CTD truncation for human transcriptome dynamics
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically
GSE159324	Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in relapsed acute myeloid leukemia [Nanopore]
GSE159512	Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in relapsed acute myeloid leukemia
GSE159582	Nanopore DNA sequencing in a model of oxidative stress
GSE162053	High throughput error correction using dual nucleotide dimer blocks allows direct single-cell nanopore transcriptome sequencing
GSE162518	Native single molecule sequencing and de novo assembly of Hepatitis B Virus to detect 5mCpG
GSE163239	The HCV Envelope Glycoprotein Down-Modulates NF-κB Signalling and Associates with Stimulation of the Host Endoplasmic Reticulum Stress Pathway
GSE165445	Long read sequencing of nuclear RNAs from human coronary artery smooth muscle cells
GSE165742	Alternative Polyadenylation by Sequential Activation of Distal and Proximal PolyA Sites
GSE165829	Analysis of lentiviral vector splicing events with nanopore sequencing
GSE166483	Cataloging human PRDM9 variability utilizing long-read sequencing technologies reveals PRDM9 population-specificity and two distinct groupings of related alleles
GSE167223	Long-RNA sequencing and ribosome profiling of inflamed beta-cells reveal an extensive translatome landscape
GSE167584	In vivo genome editing restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers [Nanopore sequencing]
GSE168007	In vivo genome editing restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers
GSE169435	The homeotherm-conserved protein CGGBP1 connects heat stress to chromosomal fusions
GSE171673	Oncogenic ZMYND11-MBTD1 fusion protein anchors the NuA4/TIP60 histone acetyltransferase complex to the coding region of active genes
GSE171990	CGGBP1-dependent CTCF-binding sites restrict ectopic transcription
GSE172227	In vitro culture at 39° C during hepatic maturation of human ES cells facilitates hepatocyte-like cell functions
GSE173374	THOC5 complexes with DDX5, DDX17 and CDK12 to regulate R loop structures and transcription elongation rate
GSE174754	Phospho-RNA sequencing with CircAID-p-seq
GSE178990	Discovery and characterization of LNCSOX17 as an essential regulator in endoderm formation
GSE180654	Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling (Nanopore)
GSE180656	Interferon inducible pseudouridine modification in human mRNA by quantitative nanopore profiling
GSE183760	Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements
GSE184081	Signal requirement for cortical potential of transplantable human neuroepithelial stem cells
GSE184890	Analysis of gene expression changes upon ZBTB18 full length (FL), ZBTB18 full length-mutant (FL-mut), ZBTB18 short form Nte (SF-Nte) and ZBTB18 short form Nte (SF-mut) in SNB19 glioblastoma cell line
GSE185307	Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing
GSE185990	Low RNA stability signifies increased post-transcriptional regulation of cell identity genes
GSE186002	Detection of revertant mosaicism in epidermolysis bullosa through Cas9-targeted long read sequencing
GSE188144	CTI-2 inhibits metastasis and epithelial-mesenchymal transition of breast cancer cells by modulating MAPK signaling pathway
GSE189138	TGS1 controls snRNA 3' end processing, prevents neurodegeneration and ameliorates SMN-dependent neurological phenotypes in vivo (Nanopore)
GSE192632	NAP-seq Reveals Novel Classes of Structured Noncoding RNAs with Regulatory Functions
GSE192955	ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data
GSE196673	Cas9-guided haplotyping of three truncation variants in autosomal recessive disease
GSE197336	To detect full-length transcript of ts-ARFGEF1 in MCF-7 cell [captureRNA]
GSE197337	To detect full-length genome of intron 19 of ARFGEF1 [intron19arfgef1]
GSE197872	Generation of full-length circRNA libraries for Oxford Nanopore long-read sequencing
GSE197976	Impact of an Immune Modulator Mycobacterium-w on Adaptive Natural Killer Cells and Protection Against COVID-19
GSE198624	Efficient detection of alternative spliced human proteome using translatome sequencing
GSE202456	G4 quadruplex landscape and its regulation revealed by a new antibody capture method
GSE204785	Full-length direct RNA sequencing identifies widespread, XRN1-mediated, shortening of stress-granule enriched mRNAs upon cellular stress
GSE204845	Single-cell multi-omics defines the cell-type specific impact of splicing aberrations in human hematopoietic clonal outgrowths
GSE206417	Integrated Gut/Liver-on-a-Chip platform as in vitro human model of non-alcoholic fatty liver disease
GSE208225	Genome-wide quantification of RNA flow across subcellular compartments reveals determinants of the mammalian transcript life cycle
GSE208259	pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts [II]
GSE208449	DNA hypomethylation restrains early antitumor immunity in prostate cancer
GSE208837	FBL catalyzes internal 2′-O-Methylation in mRNA to promote RNA stability
GSE209865	Robust methylation based classification of brain tumors using nanopore sequencing
GSE210260	DNA hypomethylation restrains early antitumor immunity in prostate cancer [Nanopore]
GSE211759	Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution [HeLa cells]
GSE211762	Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution
GSE211927	RNA-seq analysis of human placenta to elucidate the pathomechanism of spontaneous preterm birth
GSE213984	TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing
GSE215355	Merging short and stranded long reads improves transcript assembly
GSE216811	Augmenting vaccine efficacy against delta variant with ‘Mycobacterium-w’ mediated modulation of NK-ADCC and TLR-MYD88 pathways
GSE216826	MATRIN3 deficiency leads to cGAS-STING activation (MinION RNA-Seq)
GSE216830	MATRIN3 deficiency leads to cGAS-STING activation
GSE216926	A high-resolution, nanopore-based artificial intelligence assay for DNA replication stress in human cancer cells
GSE217192	RNA Methyltransferase METTL16's Protein Domains Have Differential Functional Effects on Cell Processes
GSE217710	Functional and molecular dissection of viral lncRNAs throughout HCMV life cycle [longread]
GSE217714	Functional and molecular dissection of viral lncRNAs throughout HCMV life cycle
GSE218679	Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome [Nanopore]
GSE218680	Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome
GSE218899	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [RNA-seq]
GSE218901	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [scRNA-Seq]
GSE218903	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules
GSE219250	Intronic natural antisense transcripts in glioma patient biopsies
GSE220018	long read RNA-seq from HepG2 (ENCSR724HQB)
GSE220019	long read RNA-seq from K562 (ENCSR917JIA)
GSE223104	The landscape of circular RNAs in neuroblastoma II
GSE223105	The landscape of circular RNAs in neuroblastoma
GSE223762	Senescence-associated dysregulation of translation inhibits activation of the integrated stress response
GSE223885	Deficient radiation transcription response in COVID-19 patients
GSE224018	Detection of SINEUP RNA modification by Oxford Nanopore direct-RNA sequencing
GSE224135	Impact of media culture and PBMCs signaling on in vitro CD4+ T cells cultures to an optional HIV reactivation assay design.
GSE224163	A kinetic dichotomy between mitochondrial and nuclear gene expression processes
GSE224503	Regulators of mitonuclear balance link mitochondrial metabolism to mtDNA expression
GSE224689	Regulatory principles of human mitochondrial gene expression revealed by kinetic analysis of the RNA life cycle.
GSE224819	Regulators of mitonuclear balance link mitochondrial metabolism to mtDNA expression
GSE225377	LocusMasterTE: long-read assisted short-read RNA-seq TE quantification [long]
GSE225417	Alternative splicing induced by bacterial pore-forming toxins sharpens CIRBP-mediated cell response to Listeria infection
GSE225471	Profiling the Full-Length Transcriptome of Extracellular Vesicles With Oxford Nanopore Sequencing
GSE226080	Nanopore long-read sequencing from Nutlin-3a-treated MCF-7 cells
GSE227722	Role of ZBTB18 in cytokine production and microglia phenotype in GBM
GSE228001	An extended wave of global mRNA deadenylation sets up a switch in translation regulation across the mammalian oocyte-to-embryo transition
GSE230936	Simultaneous nanopore profiling of mRNA m6A and pseudouridine reveals translation coordination
GSE232455	pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts
GSE234839	Resolution of Cystic Fibrosis Lung Disease and Inflammation Driven by Mucus Obstruction with Resolvin D1
GSE235872	Transcriptomic analysis of early HSV-1 transcription in the absence of the immediate early protein, ICP4 [Nanopore]
GSE237874	Ultra-fast deep-learned pediatric CNS tumor classification
GSE238071	High-sensitive spatially resolved T cell receptor sequencing with SPTCR-seq
GSE239579	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ONT DNA-seq]
GSE241410	Transcriptome analysis of TSC1 and TSC2 using Nanopore long-read sequencer
GSE241779	On- and off-target effects of paired CRISPR-Cas nickase in primary human cells - long-read
GSE241780	On- and off-target effects of paired CRISPR-Cas nickase in primary human cells
GSE243920	Direct long-read RNA sequencing of Raji cells
GSE245324	Dynamics and consequences of widespread transcript isoform changes during neuronal differentiation [ONT-Seq]
GSE245325	Dynamics and consequences of widespread transcript isoform changes during neuronal differentiation
GSE245460	CyCoNP lncRNA establishes cis and trans RNA-RNA interactions to supervise neuron physiology (CyCoNP RNA Pulldown).
GSE245462	CyCoNP lncRNA establishes cis and trans RNA-RNA interactions to supervise neuron physiology
GSE246151	Enhanced detection of RNA modifications with high-accuracy nanopore RNA basecalling models
GSE248011	Sarcoma Cell-specific Radiation Sensitization by Titanate Scrolled Nanosheets: Insights from Physicochemical Analysis and Transcriptomic Profiling
GSE248114	Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles [RNA-seq]
GSE248118	Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles
GSE250429	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [BCBL-1-directRNA-Seq]
GSE250435	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing
GSE254922	On- and off-target effects of paired CRISPR-Cas nickase in primary human cells - long read
GSE255044	Rapid DNA methylation-based classification of pediatric brain tumours from ultrasonic aspirate specimens
GSE256190	Genetic regulation of nascent RNA maturation revealed by direct RNA nanopore sequencing [nanopore]
GSE256233	NEAT1 promotes genome stability via m6A methylation-dependent regulation of CHD4
GSE261301	Post-transcriptional regulation by the gut microbiota decoded by nanopore direct RNA sequencing
GSE261440	Challenges in the discovery of tumor-specific alternative splicing-derived cell-surface antigens in glioma
GSE262283	Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER (cell lines)
GSE262284	Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER (whole blood)
GSE262285	Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER
GSE266588	TRMT1L-catalyzed m22G27 on tyrosine tRNA is required for efficient mRNA translation and cell survival under oxidative stress. [Nano-tRNAseq]
GSE275369	A ONECUT1 regulatory, non-coding region in pancreatic development and diabetes [Nanopore-seq]
GSE280038	Nanopore Sequencing as a Cutting-Edge Technology for Medulloblastoma Classification