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Series GSE216826 Query DataSets for GSE216826
Status Public on May 15, 2024
Title MATRIN3 deficiency leads to cGAS-STING activation (MinION RNA-Seq)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the role of Matrin 3 (MATR3) in innate immune response we analyzed and compared MATR3 KO Clones versus wildtype HAP1 cells.
 
Overall design Comparative gene expression profiling analysis of MATR3 KO versus wildtype HAP1 cells using Oxford Nanopore long-read RNA-sequencing.
 
Contributor(s) Islam Z, Chim B, Foroushani AK, Muljo S
Citation(s) 38712171
Submission date Oct 28, 2022
Last update date Aug 01, 2024
Contact name Stefan Muljo
E-mail(s) muljos@niaid.nih.gov
Organization name NIH, NIAID
Lab Laboratory of Immune System Biology
Street address 10 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20892-1892
Country USA
 
Platforms (1)
GPL24106 MinION (Homo sapiens)
Samples (4)
GSM6696293 HAP1 WT #4 rep1
GSM6696294 HAP1 WT #4 rep2
GSM6696295 MATR3 KO #1
This SubSeries is part of SuperSeries:
GSE216830 MATRIN3 deficiency leads to cGAS-STING activation
Relations
BioProject PRJNA895453

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216826_counts.and.DESeq.results.ONT.xlsx 3.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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