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GEO accession:
Series GSE232455
Query DataSets for GSE232455
Status
Public on May 14, 2023
Title
pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts
Organisms
Homo sapiens
;
synthetic construct
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37443198
Submission date
May 12, 2023
Last update date
Aug 14, 2023
Contact name
Karine Choquet
E-mail(s)
karine.choquet@usherbrooke.ca
Organization name
Université de Sherbrooke
Department
Biochemistry and Functional Genomics
Street address
3201 rue Jean-Mignault
City
Sherbrooke
State/province
Québec
ZIP/Postal code
J1E 4K8
Country
Canada
Platforms (5)
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GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24106
MinION (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL26167
PromethION (Homo sapiens)
GPL32483
Illumina iSeq 100 (synthetic construct)
Samples (107)
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GSM6338683
HeLa_control_KD_RNAseq_rep1
GSM6338684
HeLa_control_KD_RNAseq_rep2
GSM6338685
HeLa_control_KD_RNAseq_rep3
GSM6338686
HeLa_U2_KD_RNAseq_rep1
GSM6338687
HeLa_U2_KD_RNAseq_rep2
GSM6338688
HeLa_U2_KD_RNAseq_rep3
GSM6338689
HeLa_control_KD_NETseq_rep1
GSM6338690
HeLa_control_KD_NETseq_rep2
GSM6338691
HeLa_U2_KD_NETseq_rep1
GSM6338692
HeLa_U2_KD_NETseq_rep2
GSM6338693
IVT_IFRD2_WT_ex8-10_rep1
GSM6338694
IVT_IFRD2_WT_ex8-10_rep2
GSM6338695
IVT_IFRD2_WT_ex8-10_UT
GSM6338696
IVT_IFRD2_SE_ex4-10_rep1
GSM6338697
IVT_IFRD2_SE_ex4-10_rep2
GSM6338698
IVT_IFRD2_SE_ex4-10_UT
GSM6338699
IVT_IFRD2_del_ex4-10_rep1
GSM6338700
IVT_IFRD2_del_ex4-10_rep2
GSM6338701
IVT_IFRD2_del_ex4-10_UT
GSM6339788
K562_chr_rep3
GSM6339789
K562_chr_rep4
GSM6339790
K562_scrambled_nucRNA_rep1
GSM6339791
K562_scrambled_nucRNA_rep2
GSM6339792
K562_EXOSC10_KD_nucRNA_rep1
GSM6339793
K562_EXOSC10_KD_nucRNA_rep2
GSM6339794
MN_D4_chrRNA_rep1
GSM6339795
MN_D9_chrRNA_rep1
GSM6339796
MN_D9_chrRNA_rep2
GSM6339797
MN_D14_chrRNA_rep1
GSM6339798
MN_D14_chrRNA_rep2
GSM6339799
HeLa_control_KD_nanoCOP_rep1
GSM6339800
HeLa_control_KD_nanoCOP_rep2
GSM6339801
HeLa_U2_KD_nanoCOP_rep1
GSM6339802
HeLa_U2_KD_nanoCOP_rep2
GSM6339803
HeLa_control_KD_total_RNA
GSM6339804
HeLa_U2_KD_total_RNA
GSM6339805
HeLa_control_KD_chr_cDNA-PCR_rep1
GSM6339806
HeLa_control_KD_chr_cDNA-PCR_rep2
GSM6339807
HeLa_U2_KD_chr_cDNA-PCR_rep1
GSM6339808
HeLa_U2_KD_chr_cDNA-PCR_rep2
GSM6339809
HeLa_ASO_non_targeting_rep1
GSM6339810
HeLa_ASO_IFRD2_int4_rep1
GSM6339811
HeLa_ASO_IFRD2_int5_rep1
GSM6339812
HeLa_ASO_IFRD2_int9_rep1
GSM6339813
HeLa_ASO_IFRD2_int4-5_rep1
GSM6339814
HeLa_ASO_IFRD2_int4-9_rep1
GSM6339815
HeLa_ASO_IFRD2_int5-9_rep1
GSM6339816
HeLa_ASO_IFRD2_int4-5-9_rep1
GSM6339817
HeLa_ASO_non_targeting_rep2
GSM6339818
HeLa_ASO_IFRD2_int4_rep2
GSM6339819
HeLa_ASO_IFRD2_int5_rep2
GSM6339820
HeLa_ASO_IFRD2_int9_rep2
GSM6339821
HeLa_ASO_IFRD2_int4-5_rep2
GSM6339822
HeLa_ASO_IFRD2_int4-9_rep2
GSM6339823
HeLa_ASO_IFRD2_int5-9_rep2
GSM6339824
HeLa_ASO_IFRD2_int4-5-9_rep2
GSM6339825
HeLa_ASO_non_targeting_MAF1_rep1
GSM6339826
HeLa_ASO_non_targeting_MAF1_rep2
GSM6339827
HeLa_ASO_MAF1_int3_rep1
GSM6339828
HeLa_ASO_MAF1_int3_rep2
GSM6339829
HeLa_CRISPR_non_targeting_pool_rep1
GSM6339830
HeLa_CRISPR_IFRD2_ex5-ex6_rep1
GSM6339831
HeLa_CRISPR_IFRD2_ex5-int6
GSM6339832
HeLa_CRISPR_IFRD2_ex5-ex7
GSM6339833
HeLa_CRISPR_IFRD2_ex5-int7
GSM6339834
HeLa_CRISPR_IFRD2_ex5-int8C
GSM6339835
HeLa_CRISPR_IFRD2_ex6-int6
GSM6339836
HeLa_CRISPR_IFRD2_ex6-ex7
GSM6339837
HeLa_CRISPR_IFRD2_ex6-int7
GSM6339838
HeLa_CRISPR_IFRD2_ex6-int8C
GSM6339839
HeLa_CRISPR_IFRD2_int6-ex7
GSM6339840
HeLa_CRISPR_IFRD2_int6-int7
GSM6339841
HeLa_CRISPR_IFRD2_int6-int8C
GSM6339842
HeLa_CRISPR_IFRD2_ex7-int7
GSM6339843
HeLa_CRISPR_IFRD2_ex7-int8C
GSM6339844
HeLa_CRISPR_IFRD2_int7-int8A
GSM6339845
HeLa_CRISPR_IFRD2_int7-int8C
GSM6339846
HeLa_CRISPR_IFRD2_int8A-int8B
GSM6339847
HeLa_CRISPR_IFRD2_int8B-int8C
GSM6339848
HeLa_CRISPR_non_targeting_clone
GSM6339849
HeLa_CRISPR_clone_int4-int8C
GSM6339850
HeLa_CRISPR_non_targeting_pool_rep2
GSM6339851
HeLa_CRISPR_IFRD2_ex5
GSM6339852
HeLa_CRISPR_IFRD2_ex6
GSM6339853
HeLa_CRISPR_IFRD2_ex5-ex6_rep2
GSM6957729
HeLa_chrRNA_rep1a
GSM6957730
HeLa_chrRNA_rep1b
GSM6957731
HeLa_chrRNA_rep2a
GSM6957732
HeLa_chrRNA_rep2b
GSM6957733
MN_D9_chrRNA_rep1_Prom
GSM6957734
MN_D14_chrRNA_rep3_Prom
GSM6957735
myoblasts_D0_chrRNA_rep1
GSM6957736
myoblasts_D0_chrRNA_rep2
GSM6957737
myoblasts_D4_chrRNA_rep1
GSM6957738
myoblasts_D4_chrRNA_rep2
GSM6957762
MN_D0_chr_rep1
GSM6957763
MN_D0_chr_rep2
GSM6957764
MN_D4_chr_rep1
GSM6957765
MN_D9_chr_rep1
GSM6957766
MN_D9_chr_rep2
GSM6957767
MN_D14_chr_rep1
GSM6957768
MN_D14_chr_rep2
GSM6957769
MN_D4_chr_polyA_rep1
GSM6957770
MN_D9_chr_polyA_rep1
GSM6957771
MN_D9_chr_polyA_rep2
GSM6957772
MN_D14_chr_polyA_rep1
GSM6957773
MN_D14_chr_polyA_rep2
This SuperSeries is composed of the following SubSeries:
GSE208197
pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts [I]
GSE208259
pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts [II]
Relations
BioProject
PRJNA972004
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE232455_RAW.tar
141.8 Mb
(http)
(custom)
TAR (of TSV, TXT)
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