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Series GSE163239 Query DataSets for GSE163239
Status Public on Mar 07, 2022
Title The HCV Envelope Glycoprotein Down-Modulates NF-κB Signalling and Associates with Stimulation of the Host Endoplasmic Reticulum Stress Pathway
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Comparison of cells expressing or not expressing the HCV envelope glycoprotein, E1E2, reveals upregulation of host endoplasmic reticulum stress pathways, including genes such as HSPA5 and ATF3
 
Overall design Transcritome profiles of HEK293T cells transfected with control plasmid compared with those expressing E1E2 using Oxford Nanopore cDNA sequencing method.
 
Contributor(s) Paxton WA, Pollakis G, McKay L, Thomas J
Citation(s) 35371105
Submission date Dec 15, 2020
Last update date Apr 07, 2022
Contact name William Anderson Paxton
E-mail(s) wapaxton@liverpool.ac.uk
Organization name University of Liverpool
Department IVES
Street address 8 West Derby Street, Ronald Ross Building
City Liverpool
State/province England
ZIP/Postal code L69 7BE
Country United Kingdom
 
Platforms (1)
GPL24106 MinION (Homo sapiens)
Samples (10)
GSM4975439 pCDNA-1
GSM4975440 pCDNA-2
GSM4975441 pCDNA-3
Relations
BioProject PRJNA685412
SRA SRP298008

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163239_DiffExpGenes.csv.gz 885.0 Kb (ftp)(http) CSV
GSE163239_rawcounts.csv.gz 274.2 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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