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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 17, 2010 |
| Title |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Arabidopsis thaliana |
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| Submission date |
Nov 17, 2010 |
| Last update date |
Mar 31, 2016 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (2765)
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GSM624616, GSM624617, GSM674847, GSM674848, GSM762070, GSM762071
GSM762072, GSM762073, GSM762074, GSM762075, GSM762076, GSM762077, GSM762078, GSM762079, GSM762080, GSM762081, GSM762082, GSM762083, GSM762084, GSM762085, GSM762086, GSM762087, GSM762088, GSM762089, GSM762090, GSM762091, GSM762092, GSM762093, GSM762094, GSM762095, GSM762096, GSM762097, GSM762098, GSM762099, GSM762100, GSM762101, GSM762102, GSM762103, GSM762104, GSM762105, GSM762106, GSM762107, GSM762108, GSM762109, GSM762110, GSM762111, GSM764077, GSM764078, GSM764079, GSM764080, GSM764081, GSM764082, GSM798295, GSM798296, GSM798297, GSM798298, GSM819122, GSM819124, GSM819125, GSM819126, GSM819127, GSM819128, GSM819129, GSM861508, GSM861509, GSM865709, GSM865710, GSM867182, GSM867183, GSM867184, GSM867185, GSM867186, GSM867187, GSM870347, GSM870348, GSM870349, GSM870350, GSM870547, GSM870548, GSM870549, GSM870550, GSM878068, GSM878069, GSM889254, GSM889256, GSM889257, GSM889258, GSM889259, GSM889260, GSM889261, GSM889262, GSM889263, GSM889264, GSM889265, GSM889266, GSM889267, GSM889268, GSM889269, GSM889270, GSM889271, GSM889272, GSM889273, GSM889274, GSM889275, GSM889276, GSM889279, GSM893112, GSM893113, GSM893114, GSM893115, GSM893116, GSM893117, GSM893118, GSM893119, GSM893120, GSM893121, GSM893122, GSM893123, GSM893124, GSM896911, GSM896912, GSM896913, GSM896914, GSM897684, GSM897685, GSM897686, GSM897687, GSM897700, GSM897701, GSM897702, GSM897703, GSM897704, GSM897705, GSM897706, GSM897707, GSM897708, GSM897709, GSM897710, GSM897713, GSM897714, GSM897717, GSM897720, GSM897722, GSM906549, GSM906550, GSM906551, GSM906552, GSM906553, GSM906554, GSM913710, GSM913711, GSM913712, GSM913713, GSM913714, GSM913715, GSM913716, GSM938331, GSM938332, GSM938333, GSM938335, GSM938336, GSM938337, GSM940585, GSM940586, GSM940587, GSM945923, GSM945924, GSM945925, GSM945926, GSM952445, GSM958257, GSM958260, GSM958263, GSM958266, GSM958269, GSM958270, GSM958271, GSM958272, GSM958273, GSM958274, GSM958275, GSM958276, GSM967363, GSM967364, GSM967365, GSM967366, GSM967367, GSM967368, GSM967369, GSM967370, GSM991341, GSM991342, GSM991343, GSM991344, GSM991345, GSM991346, GSM991347, GSM991348, GSM991349, GSM991350, GSM991351, GSM991352, GSM995350, GSM995351, GSM1023591, GSM1023592, GSM1023593, GSM1023594, GSM1025547, GSM1025548, GSM1025549, GSM1025550, GSM1048068, GSM1048069, GSM1048070, GSM1048071, GSM1048072, GSM1048073, GSM1048074, GSM1048075, GSM1048076, GSM1048077, GSM1048078, GSM1048079, GSM1054001, GSM1054002, GSM1054003, GSM1054004, GSM1065048, GSM1065049, GSM1065050, GSM1072464, GSM1072465, GSM1072466, GSM1072467, GSM1072468, GSM1072469, GSM1072470, GSM1072471, GSM1072472, GSM1072473, GSM1072474, GSM1072475, GSM1072476, GSM1072477, GSM1072478, GSM1072479, GSM1072480, GSM1072481, GSM1072482, GSM1072483, GSM1072484, GSM1072485, GSM1072486, GSM1072487, GSM1072488, GSM1072489, GSM1072490, GSM1072491, GSM1072492, GSM1072493, GSM1072494, GSM1072495, GSM1072496, GSM1072497, GSM1072498, GSM1072499, GSM1072500, GSM1072501, GSM1072502, GSM1072503, GSM1072504, GSM1072505, GSM1080807, GSM1080808, GSM1080809, GSM1080810, GSM1085191, GSM1085192, GSM1085193, GSM1085194, GSM1085195, GSM1085196, GSM1085197, GSM1085198, GSM1085199, GSM1085200, GSM1085201, GSM1085202, GSM1085203, GSM1085204, GSM1085205, GSM1085206, GSM1085207, GSM1085208, GSM1085209, GSM1085210, GSM1085211, GSM1085212, GSM1085213, GSM1085214, GSM1085215, GSM1085216, GSM1085217, GSM1085218, GSM1085219, GSM1085220, GSM1085221, GSM1085222, GSM1085223, GSM1085224, GSM1085225, GSM1085226, GSM1085227, GSM1085228, GSM1085229, GSM1085230, GSM1085231, GSM1085232, GSM1085233, GSM1085234, GSM1085235, GSM1085236, GSM1085237, GSM1085238, GSM1085239, GSM1085240, GSM1085241, GSM1085242, GSM1085243, GSM1085244, GSM1085245, GSM1085246, GSM1085247, GSM1085248, GSM1085249, GSM1085250, GSM1085251, GSM1085252, GSM1085253, GSM1085254, GSM1085255, GSM1085256, GSM1085257, GSM1085258, GSM1085259, GSM1085260, GSM1085261, GSM1085262, GSM1085263, GSM1085264, GSM1085265, GSM1085266, GSM1085267, GSM1085268, GSM1085269, GSM1085270, GSM1085271, GSM1085272, GSM1085273, GSM1085274, GSM1085275, GSM1085276, GSM1085277, GSM1085278, GSM1085279, GSM1085280, GSM1085281, GSM1085282, GSM1085283, GSM1085284, GSM1085285, GSM1085286, GSM1085287, GSM1085288, GSM1085289, GSM1085290, GSM1085291, GSM1085292, GSM1085293, GSM1085294, GSM1085295, GSM1085296, GSM1085297, GSM1085298, GSM1085299, GSM1085300, GSM1085301, GSM1085302, GSM1085303, GSM1085304, GSM1085305, GSM1085306, GSM1085307, GSM1085308, GSM1085309, GSM1085310, GSM1085311, GSM1085312, GSM1085313, GSM1085314, GSM1085315, GSM1085316, GSM1085317, GSM1085318, GSM1085319, GSM1085320, GSM1085321, GSM1085322, GSM1085323, GSM1085324, GSM1085325, GSM1085326, GSM1085327, GSM1085328, GSM1085329, GSM1085330, GSM1085331, GSM1085332, GSM1085333, GSM1085334, GSM1085335, GSM1085336, GSM1085337, GSM1085338, GSM1085339, GSM1085340, GSM1093621, GSM1093622, GSM1108100, GSM1108101, GSM1111913, GSM1111914, GSM1116505, GSM1116506, GSM1116507, GSM1116508, GSM1116509, GSM1116510, GSM1120014, GSM1120015, GSM1120016, GSM1120017, GSM1121342, GSM1121343, GSM1121344, GSM1121345, GSM1121346, GSM1121347, GSM1121348, GSM1121349, GSM1121350, GSM1121351, GSM1121352, GSM1121353, GSM1121354, GSM1121355, GSM1121356, GSM1121357, GSM1121358, GSM1121359, GSM1121360, GSM1121361, GSM1121362, GSM1121363, GSM1121364, GSM1121365, GSM1121366, GSM1121367, GSM1121368, GSM1121369, GSM1121370, GSM1121371, GSM1121372, GSM1146785, GSM1146786, GSM1146787, GSM1146788, GSM1146789, GSM1146790, GSM1167540, GSM1167541, GSM1167542, GSM1167543, GSM1167544, GSM1167545, GSM1167546, GSM1167547, GSM1167548, GSM1167549, GSM1167550, GSM1167551, GSM1167552, GSM1167553, GSM1173267, GSM1173268, GSM1173269, GSM1173270, GSM1173271, GSM1173272...
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You can also download a list of all accessions here
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| Series (109)
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| GSE25446 |
Genome-wide comparison of H3K27me3 difference between ref6-1 and wild type Col |
| GSE25447 |
Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase |
| GSE27292 |
High-resolution analysis of parent-of-origin-allelic expression in Arabidopsis seeds |
| GSE30720 |
Seedling transcriptome sequencing of the Arabidopsis thaliana MAGIC founder accessions |
| GSE30795 |
Multiple tissue RNA sequencing of two Arabidopsis thaliana MAGIC founder accessions |
| GSE30814 |
Multiple reference genomes and transcriptomes for Arabidopsis thaliana |
| GSE32216 |
SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis |
| GSE33071 |
Whole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT |
| GSE35059 |
ChIP-Seq analysis of Phytochrome Interacting Factor 5 DNA binding in low R/FR condition |
| GSE35062 |
Phytochrome Interacting Factors 4 and 5 |
| GSE35315 |
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [ChIP-seq] |
| GSE35381 |
RNA polymerase V targets transcriptional silencing components to promoters of protein-coding genes |
| GSE35542 |
Trans Chromosomal Methylation in Arabidopsis hybrids |
| GSE35562 |
Differentiated Truncation and Uridylation Patterns of miRNAs in Arabidopsis and Rice hen1 Mutants Suggest miRNAs May Re-program RISC |
| GSE35952 |
Global Mapping at the Core of the Arabidopsis Circadian Clock Defines the Network Structure of the Oscillator |
| GSE36148 |
An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis |
| GSE36338 |
A Role for Small RNAs in DNA Double-Strand Break Repair |
| GSE36424 |
Characterization of small RNA-generating regions targeted by RNA polymerase V in Arabidopsis |
| GSE36560 |
smRNA under high osmotic stress |
| GSE36626 |
Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome (mRNA-Seq) |
| GSE36629 |
Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome (ChIP-Seq) |
| GSE36631 |
Dynamic Deposition of the Histone H3.3 Variant Accompanies Developmental Remodeling of Arabidopsis Transcriptome |
| GSE36934 |
Small RNA sequencing in Arabidopsis plants |
| GSE37160 |
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses |
| GSE37206 |
An IDN2-containing complex involved in RNA-directed DNA methylation in Arabidopsis (flowers RNA-seq) |
| GSE38286 |
DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. |
| GSE38358 |
Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA (ChIP-Seq) |
| GSE38363 |
Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA |
| GSE38600 |
Small RNAs in tgh-1 mutant |
| GSE38935 |
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes |
| GSE39214 |
Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis [RNA-Seq] |
| GSE39215 |
Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis [ChIP-Seq] |
| GSE39217 |
Genome-wide identification of PIF3-binding sites and direct-target genes of PIF3 transcriptional regulation in skotomorphogenesis |
| GSE39398 |
smRNAs generated by single-stranded and double-stranded silencers |
| GSE40329 |
Investigating putative RPS4-chromatin associations during Arabidopsis plant disease resistance, using a temperature-inducible system which resembles pathogen-infection |
| GSE40501 |
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. |
| GSE41302 |
DDM1 and RdDM are the major regulators of transposon DNA methylation in Arabidopsis |
| GSE41755 |
Arabidopsis small RNAs associated with RDR6-dependent RNA-directed DNA Methylation |
| GSE41843 |
A Role for the RNA-Binding Protein MOS2 in MicroRNA Maturation in Arabidopsis |
| GSE42695 |
Genome-wide profiling of long non-coding RNAs in Arabidopsis |
| GSE42957 |
Early disruption of maternal-zygotic interaction and activation of defense-like responses in Arabidopsis interspecific incompatibility |
| GSE43546 |
Involvement of microRNA-related regulatory pathways in glucose-mediated control of Arabidopsis early seedling development |
| GSE43857 |
Patterns of Population Epigenomic Diversity in Arabidopsis thaliana (Methyl-Seq) |
| GSE43865 |
Genome-wide analysis of LINK1 and LINK2 effects on the Arabidopsis transcriptome |
| GSE44209 |
DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV |
| GSE45685 |
Understanding transcriptional changes associated with the transition to selfing in Arabidopsis thaliana |
| GSE45687 |
The Capsella rubella genome and the genomic consequences of rapid mating system evolution |
| GSE45846 |
Characterization of SOC1’s central role in flowering by the identification of its upstream and downstream regulators |
| GSE45938 |
Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS (ChIP) |
| GSE45939 |
Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS |
| GSE45989 |
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - I |
| GSE45990 |
Incorporation of transposable element small RNAs into the Arabidopsis AGO1 protein |
| GSE46741 |
Arabidopsis circadian regulatory networks |
| GSE47202 |
Genome-wide profiling of trimethylated histone H3 lysine 27 (H3K27me3) in brm mutant seedlings and in wt seedlings |
| GSE48082 |
Temperature-dependent alternative splicing of FLM controls flowering in Arabidopsis thaliana |
| GSE48247 |
The Nuclear Immune Receptor RPS4 Is Required for RRS1SLH1-Dependent Constitutive Defense Activation in Arabidopsis thaliana. |
| GSE48617 |
Analysis of the Argonaute 4-associated non-coding RNA in Arabidopsis thaliana sheds novel insights into gene regulation through RNA-directed DNA methylation |
| GSE48851 |
Total transcriptome profiling of the Atclb1-1 loss of function mutant and wild type of Arabidopsis |
| GSE49421 |
MethylC-Seq of idm2 single mutant and idm1idm2 double mutant |
| GSE50636 |
Genome-wide profiling of H3K4me3 and H3K27me3 enrichment and mRNA levels in young leaves of Arabidopsis thaliana |
| GSE51116 |
The Nuclear Immune Receptor RPS4 Is Required for RRS1SLH1-Dependent Constitutive Defense Activation in Arabidopsis thaliana. |
| GSE51120 |
A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal [ChIP-seq] |
| GSE51121 |
A basic helix-loop-helix transcription factors network mediates the brassinosteroid signal |
| GSE51720 |
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics - II |
| GSE51721 |
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics |
| GSE52983 |
MethylC-Seq of Ws background wild-type (WT), ape1l-1 (Ws background), arp-1 (Col-0 background) and zdp-1 (Col-0 background) mutants |
| GSE53197 |
Multiple tissue RNA sequencing of 17 Arabidopsis thaliana MAGIC founder accessions |
| GSE53198 |
Root transcriptomes for the 19 parents of the Arabidopsis thaliana MAGIC lines |
| GSE53422 |
Benchmark study of different chromatin isolation methods using the E2Fa transcription factor |
| GSE53620 |
Genome-wide profiling of trimethylated histone H3 lysine 27 (H3K27me3) in wide-type, brm, clf, and brm clf mutant seedlings |
| GSE53623 |
Wide-type, brm, clf, and brm clf mutant seedlings |
| GSE53641 |
Expression profiling during arabidopsis/downy mildew interaction reveals a highly-expressed effector that attenuates responses to salicylic acid. |
| GSE53673 |
CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part |
| GSE53952 |
RNASeq of Developing Arabidopsis Seeds Producing Hydroxy-Fatty Acids |
| GSE54125 |
Seedling transcriptomes of Arabidopsis thaliana HULK mutants |
| GSE54680 |
DNA methylation variation in Arabidopsis has a genetic basis and appears to be involved in local adaptation |
| GSE54728 |
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation |
| GSE54894 |
Genome-wide profiling of H3K27me1 and 5mC enrichment in young leaves of Arabidopsis thaliana |
| GSE56706 |
ChIP-Sequencing of AL5 over-expressing Arabidopsis and its knock out mutant |
| GSE63405 |
Genome-wide analysis of gemin2 mutant transcriptome |
| GSE63407 |
Genome-wide analysis of wild type and gemin2 mutant plants exposed to cold |
| GSE66967 |
Arabidopsis shade avoidance gene expression in adult plants |
| GSE68560 |
Acute effects of light on alternative splicing in light-grown plants |
| GSE70533 |
Genome-wide Identification of CCA1 Targets Uncovers an Expanded Clock Network in Arabidopsis |
| GSE71564 |
Genome-wide dynamics of H3K27me3 and H3K4me3 during early flower development [ChIP-seq] |
| GSE71583 |
Early flower development |
| GSE75016 |
Albugo-imposed immunosuppression by compromised salicylate-triggered immunity and altered tryptophan-derived anti-microbial metabolite biosynthesis and bioavailability |
| GSE75933 |
Control, low water potential (drought) stress and stress release transcriptome analysis of mutants impaired in proline (Delta1-pyrroline-5-carboxylate synthase1-4; p5cs1-4) or abscisic acid (aba2-1) synthesis. |
| GSE78735 |
Time course transcriptional profiles of the Arabidopsis thaliana response to flg22 infiltration for all combinatorial genotypes of the alleles dde2-2, ein2-1, pad4-1, and sid2-2. |
| GSE79414 |
An Integrated miRNA Expression Atlas of Arabidopsis thaliana |
| GSE79780 |
Comparing the targets of distinct RNA Directed DNA Methylation mechanisms in Arabidopsis thaliana |
| GSE81401 |
The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem |
| GSE89402 |
Comparative transcriptome profiling of transgenic Arabidopsis thaliana lines expressing the Hyaloperonospora arabidopsidis candidate effector HaRxL106 and knock-out mutants of HaRxL106-interacting host proteins |
| GSE89591 |
DNA sequence properties that determine susceptibility to epiallelic switching [Bisulfite-Seq] |
| GSE89592 |
DNA sequence properties that determine susceptibility to epiallelic switching |
| GSE94305 |
IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis |
| GSE97917 |
Small RNA (sRNA) sequencing from A. thaliana flowers |
| GSE106415 |
Genome-wide identification of SUPPRESSOR OF GAMMA RESPONSE 1 (SOG1)-target genes in Arabidopsis |
| GSE106418 |
Genome-wide identification of SUPPRESSOR OF GAMMA RESPONSE 1-regulated and 1 (SOG1)-target genes in Arabidopsis |
| GSE109388 |
Genome-wide identification of starvation responsive genes controlled by SnRK1s and group S1 bZIPs |
| GSE109595 |
Cellulose perturbation has broad impacts on resource allocation in Arabidopsis thaliana putatively mediated by glycine rich peptides |
| GSE113810 |
Compounds released by the biocontrol yeast Hanseniaspora opuntiae protect plants against Corynespora cassiicola and Botrytis cinerea |
| GSE123522 |
Gadolinium protects Arabidopsis thaliana against Botrytis cinerea through the activation of JA/ET-induced defense responses |
| GSE149360 |
Genome-wide Analysis of Brassinosteroid Responsive small RNAs in Arabidopsis thaliana |
| GSE149430 |
Genome-wide analysis of wild type and prmt5 mutant plants (Experiment B) |
| GSE149431 |
Genome-wide analysis of wild type and prmt5 mutant plants |
| GSE158567 |
Plant roots employ cell-layer specific programs to respond to pathogenic and beneficial microbes |
| GSE181083 |
GI is a repressor of ABA transcriptional responses and sensitivity in Arabidopsis |
| GSE262756 |
Hydrogen Peroxide Regulation of Root Growth and Stem Cell Differentiation by XAANTAL1 in Arabidopsis thaliana |
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| Supplementary data files not provided |
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