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Items: 1 to 20 of 21

1.

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity of Mammalian Proteomes

(Submitter supplied) The ability to sequence genomes has far outstripped approaches for deciphering the information they encode. Here we present a suite of techniques, based on ribosome profiling (the deep-sequencing of ribosome-protected mRNA fragments), to provide genome-wide maps of protein synthesis as well as a pulse-chase strategy for determining rates of translation elongation. We exploit the propensity of harringtonine to cause ribosomes to accumulate at sites of translation initiation together with a machine learning algorithm to define protein products systematically. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL9250 GPL13112
18 Samples
Download data: TXT
Series
Accession:
GSE30839
ID:
200030839
2.

Illumina HiSeq 2000 (Mus musculus)

Platform
Accession:
GPL13112
ID:
100013112
3.

Illumina Genome Analyzer II (Mus musculus)

Platform
Accession:
GPL9250
ID:
100009250
4.

ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_yeslif Illumina HiSeq

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL13112
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765302
ID:
300765302
5.

ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_mesc_nolif Illumina HiSeq

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL13112
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765300
ID:
300765300
6.

embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_eb Illumina HiSeq

Organism:
Mus musculus
Source name:
embryoid body
Platform:
GPL13112
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765291
ID:
300765291
7.

ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_mesc_nolif Illumina HiSeq

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL13112
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765288
ID:
300765288
8.

embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_eb Illumina HiSeq

Organism:
Mus musculus
Source name:
embryoid body
Platform:
GPL13112
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765286
ID:
300765286
9.

ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_yeslif Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765301
ID:
300765301
10.

ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_mesc_nolif Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765299
ID:
300765299
11.

ES cell feeder-free, w/ LIF none ribo_mesc_nochx Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765298
ID:
300765298
12.

ES cell feeder-free, w/ LIF 90 s HRT (1 ug/ml) then 60 s CYH (100 ug/ul) ribo_mesc_harr90s Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765297
ID:
300765297
13.
14.
15.
16.

ES cell feeder-free, w/ LIF 60 s emetine ribo_mesc_emet Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765293
ID:
300765293
17.

ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) ribo_mesc_chx Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765292
ID:
300765292
18.

embryoid body 8d in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) ribo_eb Illumina GAII

Organism:
Mus musculus
Source name:
embryoid body
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765290
ID:
300765290
19.

ES cell feeder-free, w/ LIF 60 s CYH (100 ug/ml) mrna_mesc_yeslif Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765289
ID:
300765289
20.

ES cell 36 hours in low-adhesion dishes w/o LIF 60 s CYH (100 ug/ml) mrna_mesc_nolif Illumina GAII

Organism:
Mus musculus
Source name:
ES cell
Platform:
GPL9250
Series:
GSE30839
Download data: TXT
Sample
Accession:
GSM765287
ID:
300765287
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Supplemental Content

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