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GEO accession:
Sample GSM936087
Query DataSets for GSM936087
Status
Public on May 24, 2012
Title
Broad_Combined_NHEK
Sample type
SRA
Source name
NHEK
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: NHEK
cell organism: human
cell description: epidermal keratinocytes
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider
Lonza
Growth protocol
Keratinocyte_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733636
Reanalysis of
GSM733655
Reanalysis of
GSM733665
Reanalysis of
GSM733671
Reanalysis of
GSM733674
Reanalysis of
GSM733686
Reanalysis of
GSM733698
Reanalysis of
GSM733701
Reanalysis of
GSM733720
Reanalysis of
GSM733726
Reanalysis of
GSM733728
Reanalysis of
GSM733740
BioSample
SAMN02197539
Named Annotation
GSM936087_hg19_wgEncodeBroadHmmNhekHMM.bed.gz
SRA
SRX067387
SRA
SRX067406
SRA
SRX067416
SRA
SRX067422
SRA
SRX067425
SRA
SRX067437
SRA
SRX067449
SRA
SRX067452
SRA
SRX067471
SRA
SRX067477
SRA
SRX067479
SRA
SRX067491
Supplementary file
Size
Download
File type/resource
GSM936087_hg19_wgEncodeBroadHmmNhekHMM.bed.gz
5.8 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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