GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM733655 Query DataSets for GSM733655
Status Public on Jun 02, 2011
Title Bernstein_NHEK_H3K9me1
Sample type SRA
Source name NHEK
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: epidermal keratinocytes
cell sex: U
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9me1
antibody targetdescription: Histone H3 (mono-methyl K9). Is associated with active and accessible regions. NOTE CONTRAST to H3K9me3 which is associated with repressive heterochromatic state.
antibody vendorname: abcam
antibody vendorid: ab8896
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000072
replicate: 1,3,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936087
SRA SRX067406
BioSample SAMN00622077
Named Annotation GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdAlnRep1.bam 787.2 Mb (ftp)(http) BAM
GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdAlnRep2.bam 143.0 Mb (ftp)(http) BAM
GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdAlnRep3.bam 224.4 Mb (ftp)(http) BAM
GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdPk.broadPeak.gz 478.6 Kb (ftp)(http) BROADPEAK
GSM733655_hg19_wgEncodeBroadHistoneNhekH3k9me1StdSig.bigWig 596.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap