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Sample GSM733636 Query DataSets for GSM733636
Status Public on Jun 02, 2011
Title Bernstein_NHEK_CTCF
Sample type SRA
Source name NHEK
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: epidermal keratinocytes
cell sex: U
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000072
replicate: 1,3,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Lonza
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936087
SRA SRX067387
BioSample SAMN00622057
Named Annotation GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdAlnRep1.bam 538.7 Mb (ftp)(http) BAM
GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdAlnRep2.bam 173.9 Mb (ftp)(http) BAM
GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdAlnRep3.bam 107.5 Mb (ftp)(http) BAM
GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdPk.broadPeak.gz 1.2 Mb (ftp)(http) BROADPEAK
GSM733636_hg19_wgEncodeBroadHistoneNhekCtcfStdSig.bigWig 298.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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