GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM936082
Query DataSets for GSM936082
Status
Public on May 24, 2012
Title
Broad_Combined_GM12878
Sample type
SRA
Source name
GM12878
Organism
Homo sapiens
Characteristics
lab: Broad
lab description: Bernstein - Broad Institute
datatype: Combined
datatype description: Multi-assay Synthesis
cell: GM12878
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
softwareversion: ChromHMM_ENCODEDynamicsPaper
Biomaterial provider
Coriell
Growth protocol
GM12878_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHmm
Submission date
May 23, 2012
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE38163
Chromatin State Segmentation by HMM from ENCODE/Broad
Relations
Reanalysis of
GSM733642
Reanalysis of
GSM733664
Reanalysis of
GSM733677
Reanalysis of
GSM733679
Reanalysis of
GSM733708
Reanalysis of
GSM733736
Reanalysis of
GSM733742
Reanalysis of
GSM733752
Reanalysis of
GSM733758
Reanalysis of
GSM733767
Reanalysis of
GSM733769
Reanalysis of
GSM733771
Reanalysis of
GSM733772
BioSample
SAMN02197567
Named Annotation
GSM936082_hg19_wgEncodeBroadHmmGm12878HMM.bed.gz
SRA
SRX067393
SRA
SRX067415
SRA
SRX067428
SRA
SRX067430
SRA
SRX067459
SRA
SRX067487
SRA
SRX067493
SRA
SRX067503
SRA
SRX067509
SRA
SRX067518
SRA
SRX067520
SRA
SRX067522
SRA
SRX067523
Supplementary file
Size
Download
File type/resource
GSM936082_hg19_wgEncodeBroadHmmGm12878HMM.bed.gz
5.3 Mb
(ftp)
(http)
BED
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
