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Sample GSM733664 Query DataSets for GSM733664
Status Public on Jun 02, 2011
Title Bernstein_GM12878_H3K9me3
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype: normal
cell lineage: mesoderm
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: abcam
antibody vendorid: ab8898
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000037
replicate: 1,3,2
softwareversion: ScriptureVPaperR3
Biomaterial provider Coriell;
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (2)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Reanalyzed by GSM936082
SRA SRX067415
BioSample SAMN00622085
Named Annotation GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdSig.bigWig

Supplementary file Size Download File type/resource
GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdAlnRep1.bam 645.9 Mb (ftp)(http) BAM
GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdAlnRep2.bam 521.7 Mb (ftp)(http) BAM
GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdAlnRep3.bam 499.5 Mb (ftp)(http) BAM
GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdPk.broadPeak.gz 1.1 Mb (ftp)(http) BROADPEAK
GSM733664_hg19_wgEncodeBroadHistoneGm12878H3k9me3StdSig.bigWig 663.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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