|
Status |
Public on Jun 02, 2011 |
Title |
Bernstein_GM12878_H4K20me1 |
Sample type |
SRA |
|
|
Source name |
GM12878
|
Organism |
Homo sapiens |
Characteristics |
lab: Broad lab description: Bernstein - Broad Institute datatype: ChipSeq datatype description: Chromatin IP Sequencing cell organism: human cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus cell karyotype: normal cell lineage: mesoderm antibody antibodydescription: rabbit polyclonal. Antibody Target: H4K20me1 antibody targetdescription: Histone H4 (mono-methyl K20). Is associated with active and accessible regions. In mammals, PR-Set7 specifically catalyzes H4K20 monomethylation. NOTE CONTRAST to H3K20me3 which is associated with heterochromatin and DNA repair. antibody vendorname: abcam antibody vendorid: ab9051 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: wgEncodeEH000037 labversion: Illumina_GA2e and Illumina_GA2x replicate: 1,2 softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
Coriell; http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878
|
Growth protocol |
GM12878_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer II |
|
|
Data processing |
For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
May 27, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9115 |
Series (2) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
Reanalyzed by |
GSM936082 |
SRA |
SRX067393 |
BioSample |
SAMN00622064 |
Named Annotation |
GSM733642_hg19_wgEncodeBroadHistoneGm12878H4k20me1StdSig.bigWig |