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Series GSE44601 Query DataSets for GSE44601
Status Public on Apr 01, 2013
Title Expression data from SND1 knockdown clones of human HCC cell line QGY-7703
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Staphylococcal nuclease domain-containing protein 1 (SND1) is overexpressed in human hepatocellular carcinoma (HCC) and positively regulates development and progression of HCC. We established stable clones expressing SND1 shRNA in QGY-7703 cells and analyzed the gene expression profiles of a control clone and two SND1 knockdown clones to check what genes are regulated by SND1.
Overall design Steady-state proliferating cells were collected for RNA extraction and Affymetrix microarray hybridization. Three biological replicates each of a control clone and 2 SND1 knockdown clones.
Contributor(s) Sarkar D, Serrano M
Citation(s) 24918049
Submission date Feb 23, 2013
Last update date Dec 06, 2018
Contact name Myrna Serrano
Organization name Virginia Commonwealth University
Street address 1101 East Marshall St
City Richmond
State/province VA
ZIP/Postal code 23298
Country USA
Platforms (1)
GPL571 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array
Samples (9)
GSM1087632 QGY, biological rep1
GSM1087633 QGY, biological rep2
GSM1087634 QGY, biological rep3
BioProject PRJNA190626

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Supplementary file Size Download File type/resource
GSE44601_RAW.tar 16.9 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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