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Platform GPL922 Query DataSets for GPL922
Status Public on Sep 22, 2005
Title Agilent-011472 Mouse Development Oligo Microarray G4120A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4120A
 
Description The content on this microarray was derived from the National Institute on Aging/National Institute of Health cDNA mouse clone set that includes genes from sequences of stem cells and very early-stage embryo cDNA libraries.

Arrays of this design have barcodes that begin with 16011472 or 2511472.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7269.
 
Submission date Jan 07, 2004
Last update date Jan 18, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (147) GSM36124, GSM36125, GSM48524, GSM48525, GSM48526, GSM48527 
Series (16)
GSE2043 Six1 and Six4 target genes in mk4 cells
GSE2458 Cross-platform comparability of microarray data
GSE2934 Comparison of gene expression between male and female blastocysts
Relations
Alternative to GPL7269

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
CLONE_ID
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC CLONE_ID GENE_SYMBOL ACCESSION_STRING DESCRIPTION
1 105 215 BrightCorner BrightCorner pos
2 105 214 NegativeControl NegativeControl neg
3 105 213 L0267E07-3 A_65_P00704 FALSE L0267E07 Psma5 ucluster|U003729|nap|NAP096878-001 Mus musculus proteasome (prosome, macropain) subunit, alpha type 5 (Psma5), mRNA
4 105 212 U54984.1 A_65_P00799 FALSE U54984.1 Mmp14 ucluster|U015622|nap|NAP122406-001 Mus musculus matrix metalloproteinase 14 (membrane-inserted) (Mmp14), mRNA
5 105 211 H3149F09-5 A_65_P00894 FALSE H3149F09 Cdh11 ucluster|U030147|nap|NAP099853-001 Mus musculus cadherin 11 (Cdh11), mRNA
6 105 210 C0152H05-3 A_65_P00986 FALSE C0152H05 ucluster|U025908|nap|NAP032795-1 UNKNOWN
7 105 209 Pro25G Pro25G pos
8 105 208 L0951F09-3 A_65_P01182 FALSE L0951F09 ucluster|U038639|nap|NAP033547-1 UNKNOWN
9 105 207 H3065B10-3 A_65_P01272 FALSE H3065B10 nap|NAP039808-1 Intronic in U038657
10 105 206 C0267B04-3 A_65_P01370 FALSE C0267B04 nap|NAP045502-1 UNKNOWN
11 105 205 H3103D06-3 A_65_P01468 FALSE H3103D06 Tlk2 ucluster|U043238|nap|NAP001744-002 Mus musculus tousled-like kinase 2 (Arabidopsis) (Tlk2), mRNA
12 105 204 H3158G12-3 A_65_P01567 FALSE H3158G12 Mtl5 ucluster|U038769|nap|NAP096903-001 Mus musculus metallothionein-like 5, testis-specific (tesmin) (Mtl5), mRNA
13 105 203 J1002D05-3 A_65_P01662 FALSE J1002D05 UNKNOWN
14 105 202 Pro25G Pro25G pos
15 105 201 L0253B01-3 A_65_P01852 FALSE L0253B01 ucluster|U034379|nap|NAP106873-1 Similar to: Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732469E12 product:unclassifiable, full insert sequence
16 105 200 C0162E08-3 A_65_P01947 FALSE C0162E08 ucluster|U002818|nap|NAP035092-1 UNKNOWN
17 105 199 K0515H11-3 A_65_P02041 FALSE K0515H11 nap|NAP032613-1 Intronic in U036111
18 105 198 K0310D04-3 A_65_P02126 FALSE K0310D04 HIP-1|ll|MGC27616 ucluster|U026819|nap|NAP094600-001 Mus musculus hypothetical protein MGC27616 (MGC27616), mRNA
19 105 197 H3046H03-3 A_65_P02223 FALSE H3046H03 MGC37385 ucluster|U024673|nap|NAP095370-001 Mus musculus hypothetical protein MGC37385 (MGC37385), mRNA
20 105 196 J0068H05-3 A_65_P02319 FALSE J0068H05 nap|NAP039853-1 Intronic in U036427

Total number of rows: 22575

Table truncated, full table size 2575 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL922_old_annotations.txt.gz 818.3 Kb (ftp)(http) TXT

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