NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM48524 Query DataSets for GSM48524
Status Public on Apr 21, 2005
Title R-2-C2-1
Sample type RNA
 
Channel 1
Source name cy3 Liver5
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name cy5 Pool
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).
 
Submission date Apr 19, 2005
Last update date May 27, 2005
Contact name Kenneth Lyon Phillips
E-mail(s) kphillips@icoria.com
Phone 919 425 3075
Organization name Paradigm Array Labs
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL922
Series (1)
GSE2458 Cross-platform comparability of microarray data

Data table header descriptions
ID_REF
X the X-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y the Y-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. the diameter in µm of the feature-indicator.
F635 Median median feature pixel intensity at wavelength 1 (635 nm).
F635 Mean mean feature pixel intensity at wavelength 1 (635 nm).
F635 SD the standard deviation of the feature pixel intensity at wavelength 1 (635 nm).
B635 Median the median feature background intensity at wavelength 1 (635 nm).
B635 Mean the mean feature background intensity at wavelength 1 (635 nm).
B635 SD
% > B635+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 1 (635 nm).
% > B635+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 1 (635 nm).
F635 % Sat. the percentage of feature pixels at wavelength 1 that are saturated.
F532 Median median feature pixel intensity at wavelength 2 (532 nm).
F532 Mean mean feature pixel intensity at wavelength 2 (532 nm).
F532 SD the standard deviation of the feature intensity at wavelength 2 (532 nm).
B532 Median the median feature background intensity at wavelength 2 (532 nm).
B532 Mean the mean feature background intensity at wavelength 2 (532 nm).
B532 SD the standard deviation of the feature background intensity at wavelength 2 (532 nm).
% > B532+1SD the percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength 2 (532 nm).
% > B532+2SD the percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength 2 (532 nm).
F532 % Sat. the percentage of feature pixels at wavelength 2 that are saturated.
Ratio of Medians
Ratio of Means
Median of Ratios
Mean of Ratios
Ratios SD
Rgn Ratio
Rgn R²
F Pixels the total number of feature pixels.
B Pixels the total number of background pixels.
Sum of Medians the sum of the median intensities for each wavelength, with the median background subtracted.
Sum of Means the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
VALUE log (base 2) transform of the ratio of the medians.
F635 Median - B635 the median feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Median - B532 the median feature pixel intensity at wavelength 2 with the median background subtracted.
F635 Mean - B635 the mean feature pixel intensity at wavelength 1 with the median background subtracted.
F532 Mean - B532 the mean feature pixel intensity at wavelength 2 with the median background subtracted.
Flags the type of flag associated with a feature.

Data table
ID_REF X Y Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R² F Pixels B Pixels Sum of Medians Sum of Means VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 Flags
22575 1100 12970 110 167 206 201 40 43 13 100 100 0 18586 18190 2838 50 54 47 100 100 0 0.007 0.009 0.013 0.016 1.630 0.013 0.264 80 594 18663 18306 -7.189 127 18536 166 18140 0
22360 1290 12970 110 188 216 129 41 43 15 100 100 0 18470 17944 2288 50 59 102 100 100 0 0.008 0.010 0.013 0.016 1.639 0.011 0.412 80 578 18567 18069 -6.969 147 18420 175 17894 0
22145 1490 12970 110 52 87 126 42 44 14 40 26 0 136 280 561 49 55 90 46 15 0 0.115 0.195 0.194 0.176 2.712 0.173 0.695 80 589 97 276 -3.121 10 87 45 231 0
21930 1680 12970 110 81 113 131 39 42 12 82 70 0 163 259 331 49 50 13 100 100 0 0.368 0.352 0.337 0.297 2.595 0.327 0.675 80 566 156 284 -1.441 42 114 74 210 0
21715 1860 12980 110 97 137 101 40 43 12 87 78 0 148 209 214 50 51 13 100 98 0 0.582 0.610 0.574 0.523 2.953 0.676 0.334 80 546 155 256 -0.782 57 98 97 159 0
21500 2040 12970 110 292 338 167 41 44 20 100 98 0 235 294 230 48 51 15 100 100 0 1.342 1.207 1.313 1.284 1.718 1.121 0.742 80 567 438 543 0.425 251 187 297 246 0
21285 2230 12970 110 360 394 206 41 56 92 100 76 0 280 348 316 48 58 67 100 86 0 1.375 1.177 1.295 1.269 1.732 0.624 0.660 80 580 551 653 0.459 319 232 353 300 0
21070 2420 12970 110 359 417 266 42 56 92 100 91 0 227 301 355 48 58 67 98 78 0 1.771 1.482 1.623 1.713 1.594 1.095 0.753 80 575 496 628 0.825 317 179 375 253 0
20855 2620 12970 120 1610 1703 733 42 43 13 100 99 0 625 784 591 48 49 13 99 99 0 2.718 2.257 2.574 2.482 1.615 2.095 0.658 120 644 2145 2397 1.442 1568 577 1661 736 0
20640 2800 12970 120 508 688 689 40 42 11 99 98 0 305 688 1274 47 50 14 99 98 0 1.814 1.011 1.591 1.481 2.005 0.579 0.666 120 616 726 1289 0.859 468 258 648 641 0
20425 2980 12970 110 193 212 78 41 46 31 98 98 0 176 197 107 47 50 17 100 100 0 1.178 1.140 1.167 1.135 1.890 1.308 0.601 80 547 281 321 0.237 152 129 171 150 0
20210 3170 12970 110 293 387 686 41 49 45 100 98 0 232 354 762 48 52 21 100 100 0 1.370 1.131 1.323 1.286 1.674 1.007 0.875 80 553 436 652 0.454 252 184 346 306 0
19995 3360 12980 120 482 606 505 41 45 33 99 99 0 361 517 672 48 51 23 95 94 0 1.409 1.205 1.451 1.547 2.028 0.877 0.749 120 667 754 1034 0.495 441 313 565 469 0
19780 3560 12970 110 751 906 471 41 43 12 100 100 0 677 913 732 49 51 20 100 100 0 1.131 1.001 1.147 1.121 1.460 0.808 0.754 80 562 1338 1729 0.177 710 628 865 864 0
19565 3740 12970 110 154 172 89 41 43 13 100 97 0 170 175 55 49 50 12 100 100 0 0.934 1.040 0.989 0.933 1.806 1.373 0.569 80 566 234 257 -0.099 113 121 131 126 0
19350 3930 12970 110 297 314 93 40 43 14 100 100 0 216 236 81 48 51 18 100 100 0 1.530 1.457 1.498 1.469 1.444 1.611 0.775 80 556 425 462 0.613 257 168 274 188 0
19135 4110 12970 110 251 267 119 41 44 19 100 100 0 222 237 88 49 51 17 100 100 0 1.214 1.202 1.220 1.145 1.576 1.217 0.896 80 556 383 414 0.280 210 173 226 188 0
18920 4300 12970 110 262 337 304 41 47 42 100 100 0 238 280 196 50 55 73 100 83 0 1.176 1.287 1.126 1.166 1.505 1.081 0.676 80 568 409 526 0.233 221 188 296 230 0
18705 4490 12970 110 331 445 649 42 48 46 100 100 0 304 383 269 49 54 72 100 91 0 1.133 1.207 1.138 1.068 1.595 1.000 0.682 80 575 544 737 0.181 289 255 403 334 0
18490 4690 12970 120 218 246 119 41 45 24 96 95 0 199 212 73 49 51 14 98 97 0 1.180 1.258 1.212 1.168 1.797 1.512 0.698 120 626 327 368 0.239 177 150 205 163 0

Total number of rows: 22575

Table truncated, full table size 3526 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap